2dpd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC B-SITE
reference	Wilce et al. 'to ? ? ?
source	Bacillus subtilis
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1f4k_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2dpd_A interface=28,46,47,48,49,51,52, stgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf > 2dpd_B interface=30,48,49,50,53,54,78, rsstgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTevYRslhellddgilkqikvkkegaklQevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf
interface signature	LNHTEYR/LNHTYRQ

Estimated binding specificities ?

readout + contact

# IC=11.992 IC/col=0.857 n_of_columns=14

specificity:

A |   0  52  80   0  96  24  24  52   0   0   0   4   0  88
C |   0  16   8  96   0  24  24   8   0   0   0  12  96   4
G |  96  12   4   0   0  24  24  24   0  96   0  12   0   4
T |   0  16   4   0   0  24  24  12  96   0  96  68   0   0

scan!

home
updated Fri Dec 15 11:43:28 2023