2d45_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MECI-MECA REPRESSOR-OPERATOR COMPLEX
reference	Musayev et al. 'Acta 62 320 2006
source	Staphylococcus aureus
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1sax_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2d45_A interface=39,40,42,43,44,47, tyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrniln > 2d45_B interface=41,42,44,45,46,49, nktyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrniln
interface signature	KTRTLR/KTRTLR

Estimated binding specificities ?

readout + contact

# IC=12.609 IC/col=0.788 n_of_columns=16

specificity:

A |   5  24  24   1  92   0  84   3  63   6   0   0  92  24   5  96
C |   4  24  24  11   1  96   7   3  13   3   0   0   0  24  21   0
G |   3  24  24   0   1   0   3   6  15   3  96   0   4  24  24   0
T |  84  24  24  84   2   0   2  84   5  84   0  96   0  24  46   0

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updated Fri Dec 15 11:43:13 2023