interface graph thumbnail
legend  pdf

structure nameFITAB BOUND TO DNA
(TRAFFICKING PROTEIN A)
referenceBrennan et al. J.Biol.Chem. 281 37942 2006
sourceNEISSERIA GONORRHOEAE
experimentX-ray (resolution=3.00, R-factor=0.213)
structural superfamilyRibbon-helix-helix;
multimeric complexes2bsq_EFGH 2h1o_EFGH
redundant complexes2h1o
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSVR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.775 n_of_columns=4 specificity:   
A |   0   0  54  16
C |   0   0  13  13
G |   0  96  16  13
T |  96   0  13  54
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: FITA
TGATAGCAPubMed2bsq_E(1.82e-03), 2bsq_EFGH(7.92e-07), 2h1o_EFGH(1.93e-08)
TGCTATCAPubMed2bsq_E(1.82e-03), 2bsq_EFGH(7.92e-07), 2h1o_EFGH(1.93e-08)

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updated Tue Dec 19 06:23:07 2023