2aor_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MUTH-HEMIMETHYLATED DNA COMPLEX
reference	Ghirlando et al. Mol.Cell 20 155 2005
source	Haemophilus influenzae
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	2aor_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2aor_A interface=40,45,58,83,86,176,177,178,204, mipqtleqllsqaqsiagltfgeladelhipvpidlkrdKgwvgMlleralgatagsKaeqdfshlgvelktlpinaegyplEttFvslaplvqnsgvkwenshvrhklscvlwmpiegsrhiplrerhigapifwkptaeqerqlkqdweelmdlivlgkldqitarigevmqlRPKgansravtkgigkngeiidtlplgfYlrkeftaqilnaflet > 2aor_B interface=40,45,58,83,86,176,177,178,204, mipqtleqllsqaqsiagltfgeladelhipvpidlkrdKgwvgMlleralgatagsKaeqdfshlgvelktlpinaegyplEttFvslaplvqnsgvkwenshvrhklscvlwmpiegsrhiplrerhigapifwkptaeqerqlkqdweelmdlivlgkldqitarigevmqlRPKgansravtkgigkngeiidtlplgfYlrkeftaqilnafletk
interface signature	KMKEFRPKY/KMKEFRPKY

Estimated binding specificities ?

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# IC=12.408 IC/col=0.689 n_of_columns=18

specificity:

A |   6   0  12   0   0  12  24  24  24  24  24  24   6   0  96  78   0   0
C |   0   0   6   0  96  60  24  24  24  24  24  24  12   0   0   6  96  96
G |  90  96   6   0   0  12  24  24  24  24  24  24  66  96   0   6   0   0
T |   0   0  72  96   0  12  24  24  24  24  24  24  12   0   0   6   0   0

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updated Fri Dec 15 11:36:16 2023