1zg5_EF : 3D-footprint complex

structure name	NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE
reference	Kaczor-Grzeskowiak et al.
source	Escherichia coli
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	1je8_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1zg5_E interface=36,37,39,40,41,43, erdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif > 1zg5_F interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif
interface signature	STKVHK/STKVHK

Estimated binding specificities ?

readout + contact

# IC=13.057 IC/col=0.816 n_of_columns=16

specificity:

A |   0  24   0   0  10   0   9  24  24  64   0  10   0   0   4  96
C |   0  24  96  96  67  96  10  24  24   7   0   3   0   0   7   0
G |   0  24   0   0   3   0  10  24  24  14  96  71  96  96  14   0
T |  96  24   0   0  16   0  67  24  24  11   0  12   0   0  71   0

scan!

home
updated Fri Dec 15 11:30:28 2023