1zg1_EF : 3D-footprint complex

structure name	NARL COMPLEXED TO NIRB PROMOTER NON-PALINDROMIC TAIL-TO-TAIL DNA SITE
reference	Kaczor-Grzeskowiak et al.
source	Escherichia coli
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	1je8_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1zg1_E interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif > 1zg1_F interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif
interface signature	STKVHK/STKVHK

Estimated binding specificities ?

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# IC=10.998 IC/col=0.687 n_of_columns=16

specificity:

A |   0  87   5   3  24  24  13  24  24  77   5  24   0   0   3  96
C |   0   3  85   3  24  24   8  24  24  13   3  24   0   0   3   0
G |   0   3   3   3  24  24  10  24  24   3   3  24  96  96   5   0
T |  96   3   3  87  24  24  65  24  24   3  85  24   0   0  85   0

scan!

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updated Fri Dec 15 11:30:10 2023