interface graph thumbnail
legend  pdf

structure nameTHE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX
(PROTEIN GCN4)
referenceEllenberger et al.
sourceSACCHAROMYCES CEREVISIAE
experimentX-ray (resolution=2.90, R-factor=0.230)
structural superfamilyLeucine zipper domain;
sequence familybZIP transcription factor; Basic region leucine zipper;
multimeric complexes1ysa_CD
reference complex2dgc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKNTAAR

Estimated binding specificities ?

readout + contactlogo
# IC=3.882 IC/col=0.647 n_of_columns=6 specificity:   
A |  75   0   0  73  24  22
C |   7   1   0   7  24   8
G |   7   7  96   9  24   7
T |   7  88   0   7  24  59
scan!

home
updated Mon Dec 18 06:19:50 2023