1yfi_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE MSPI IN COMPLEX WITH ITS COGNATE DNA IN P212121 SPACE GROUP
reference	Roberts et al. 'Protein 14 2590 2005
source	MORAXELLA SP.
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1yfi_A interface=27,123,127,130,246,248,249,251,253,259,261, mrtellsklyddfgidqlphtqhgvtSdrlgklyekyildifkdieslkkyntnafpqekdisskllkalnldldniidvsssdtdlgrtiaggspktdatirftfhnqssrlvplnikhssKkkvSiaEydvetictgvgisdgelkelirkhqndqsaklftpvqkqrltellepyrerfirwcvtlraeksegnilhpdllirfqvidreyvdvtikniddyvsdriaegskarkpgfgtglNwTYaSgSkakkmQfKg > 1yfi_B interface=123,127,130,237,246,248,249,251,253,259,261, mrtellsklyddfgidqlphtqhgvtsdrlgklyekyildifkdieslkkyntnafpqekdisskllkalnldldniidvsssdtdlgrtiaggspktdatirftfhnqssrlvplnikhssKkkvSiaEydvetictgvgisdgelkelirkhqndqsaklftpvqkqrltellepyrerfirwcvtlraeksegnilhpdllirfqvidreyvdvtikniddyvsdriaegskaRkpgfgtglNwTYaSgSkakkmQfKg
interface signature	SKSENTYSSQK/KSERNTYSSQK

Estimated binding specificities ?

readout + contact

# IC=9.810 IC/col=0.755 n_of_columns=13

specificity:

A |   0   0   0   0  27  24  24  24  24   0   0  27   0
C |  96  69   0   0  13  24  24  24  24  96  96   1   0
G |   0   0  96  96  54  24  24  24  24   0   0  68  96
T |   0  27   0   0   2  24  24  24  24   0   0   0   0

scan!

home
updated Fri Dec 15 11:27:47 2023