1ya6_AB : 3D-footprint complex

structure name	ALPHA-GLUCOSYLTRANSFERASE IN COMPLEX WITH UDP AND A 13-MER DNA CONTAINING A CENTRAL A:G MISMATCH
reference	Lariviere et al. J.Mol.Biol. 352 139 2005
source	Enterobacteria phage T4
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	UDP-Glycosyltransferase/glycogen phosphorylase;
reference complex	1y8z_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ya6_A interface=46,186,187,215,216,217,218,219,220,221,222,224,254, smricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksfTrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslrrnlgleetvrradvifshsdngdfnptvynfqppmdivkvrstywkdvseinmninrwigrtTTwkgfyqmfdfhekflkpagkstvmeglERSPAFIAiKekgipyeyygnreidkmnlapnqpaqildCyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk > 1ya6_B interface=122,184,214,215,216,219, mgsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvLslrrnlgleetvrradvifshsdptvynfqppmdivkvrstywkdvseinmninrwigrttTwkgfyqmfdfhekflkpagkstvmeglerSPAfiAikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk
interface signature	TTTERSPAFIAKC/LTSPAA

Estimated binding specificities ?

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# IC=6.714 IC/col=0.746 n_of_columns=9

specificity:

A |   0  24  64   5  16   0   0  96  10
C |  96  24  10  12  48   0   0   0  10
G |   0  24  12  10  16   0  96   0  64
T |   0  24  10  69  16  96   0   0  12

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updated Fri Dec 15 11:27:18 2023