interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(DI)G); A HUMAN TELOMERIC REPEAT CONTAINING INOSINE
(Heterogeneous nuclear ribonucleoprotein A1)
referenceMyers et al. J.Mol.Biol. 342 743 2004
sourceHomo sapiens
experimentX-ray (resolution=2.00, R-factor=0.231)
structural superfamilyRNA-binding domain, RBD;
sequence familyRNA recognition motif aka RRM, RBD, or;
reference complex1u1q_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEQKFDVMFREKAVRSH

Estimated binding specificities ?

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# IC=7.136 IC/col=1.019 n_of_columns=7 specificity:   
A |   0  96   0   0  24   0   9
C |   0   0   0   0  24   0   9
G |   0   0  96  96  24   0   9
T |  96   0   0   0  24  96  69
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updated Mon Dec 18 06:10:44 2023