1u0d_AB : 3D-footprint complex

structure name	Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI
reference	Stoddard et al. J.Mol.Biol. 342 31 2004
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u0d_A interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 1u0d_B interface=23,25,27,29,31,32,37,43,45,65,67,69,72,139, ntkynkefllylagfvdgdgsiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQKNSHQQTYRRVKT/IQKNSHQQTYRRVT

Estimated binding specificities ?

readout + contact

# IC=21.294 IC/col=1.014 n_of_columns=21

specificity:

A |   0   6  96  92   0   3   0   6   0   6  77  24  11   0  96   0   5  24   0   0   0
C |   0   3   0   0  96   1   0   2  96   3  10  24  72   0   0  96   3  24   0  96   0
G |  96  29   0   4   0   0  96   3   0   3   3  24  10  96   0   0   3  24   0   0  96
T |   0  58   0   0   0  92   0  85   0  84   6  24   3   0   0   0  85  24  96   0   0

scan!

home
updated Fri Dec 15 11:08:56 2023