1tx3_ABCD : 3D-footprint complex

structure name	HINCII BOUND TO COGNATE DNA
reference	Horton et al.
source	Haemophilus influenzae
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	2gig_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1tx3_A interface=100,101,128,129,131,132,190,192,194,195,196,198,200, sfikpiyqdinsiligqkvkrpaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQNdtadillvkdqfyelldvktrnisksAQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyil > 1tx3_B interface=28,106,107,133,135,137,138,196,198,200,201,202,204,206, sfikpiyqdinsiligqkvkrpktlsgHaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQNdtadillvkdqfyelldvktrniskSaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi > 1tx3_C interface=30,108,134,136,138,139,197,199,201,202,203,205,207, sfikpiyqdinsiligqkvkrpksgtlsgHaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQndtadillvkqfyelldvktrniskSaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi > 1tx3_D interface=96,125,127,128,186,188,190,191,192,194,196, sfikpiyqdinsiligqkvkrepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQndtadillvkdqfyelldvktrnisksaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi
interface signature	QNAQPNYNAAAQQ/HQNSQPNYNAAAQQ/HQSQPNYNAAAQQ/QQPNYNAAAQQ

Estimated binding specificities ?

readout + contact

# IC=18.070 IC/col=0.903 n_of_columns=20

specificity:

A |   0   0   0   1   0  96   0   0  24  24  24  24   8   0   2   7   7  96   0   0
C |   0   0   0  88   0   0  96  81  24  24  24  24   0   0  14  75   1   0  96  82
G |  96  96   0   0  96   0   0   1  24  24  24  24  88  96   7   7  88   0   0   7
T |   0   0  96   7   0   0   0  14  24  24  24  24   0   0  73   7   0   0   0   7

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updated Fri Dec 15 11:07:55 2023