1rzr_CG : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR-PHOSPHOPROTEIN-DNA COMPLEX
reference	Schumacher et al. 'Cell(Cambridge,Mass.)' 118 731 2004
source	BACILLUS MEGATERIUM
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1rzr_C interface=5,15,16,17,18,20,21,29,52,55,56, mnvtIydvareasvSMATvSRvvngnpnVkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk > 1rzr_G interface=5,15,16,17,20,21,52,55,56, mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk
interface signature	ISMATSRVALA/ISMASRALA

Estimated binding specificities ?

readout + contact

# IC=13.679 IC/col=0.977 n_of_columns=14

specificity:

A |   0   0   6  24  82   4   0   0   4   4   4   4   0  96
C |   0   0   4  24   4   4  96   0  82   6   4   4  96   0
G |   0  96   4  24   4  84   0  96   4   4   4   6   0   0
T |  96   0  82  24   6   4   0   0   6  82  84  82   0   0

scan!

home
updated Fri Dec 15 10:56:24 2023