1rzr_AD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR-PHOSPHOPROTEIN-DNA COMPLEX
reference	Schumacher et al. 'Cell(Cambridge,Mass.)' 118 731 2004
source	BACILLUS MEGATERIUM
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1rzr_A interface=5,15,16,17,20,21,52,55,56, mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk > 1rzr_D interface=5,15,16,17,20,21,52,55,56, mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk
interface signature	ISMASRALA/ISMASRALA

Estimated binding specificities ?

readout + contact

# IC=12.114 IC/col=0.865 n_of_columns=14

specificity:

A |   6   0   4  24  96   4   0   0   9   9  24   0   0  91
C |   4   0  11  24   0  11  96   0  68   5  24   0  96   5
G |   4  96  13  24   0  77   0  96  10   9  24   0   0   0
T |  82   0  68  24   0   4   0   0   9  73  24  96   0   0

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updated Fri Dec 15 10:56:06 2023