1rz9_ABCDE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AAV REP COMPLEXED WITH THE REP-BINDING SEQUENCE
reference	Hickman et al.
source	Adeno-associated virus - 5
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	1uut_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1rz9_A interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_B interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_C interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_D interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_E interface=102,106,137, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes
interface signature	MRKK/MRKK/MRKK/MRKK/MRK

Estimated binding specificities ?

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# IC=17.637 IC/col=0.882 n_of_columns=20

specificity:

A |   3   0  96  24   5   9  75   0   0   1  67   9   0   0  95  24   2   1  24  71
C |  92   0   0  24  88  79   7   0  96   0   7  13  96   2   0  24  92   0  24   3
G |   1  96   0  24   1   7   7   7   0  94  13  69   0  94   1  24   1  94  24   1
T |   0   0   0  24   2   1   7  89   0   1   9   5   0   0   0  24   1   1  24  21

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updated Fri Dec 15 10:55:21 2023