1qln_A : 3D-footprint complex

structure name	STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX (BACTERIOPHAGE T7 RNA POLYMERASE)
reference	Cheetham et al. Science 286 2305 1999
source	BACTERIOPHAGE T7
experiment	X-ray (resolution=2.40, R-factor=0.223)
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
reference complex	1msw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1qln_A interface=75,77,114,118,185,210,213,216,219,725,727,735,737,739,740,741, iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvQavaSaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhKedsihvgvrciemliestgmvslhRqnAgvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTINtnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa
interface signature	RKQSKRAVDRNRQTIN

Estimated binding specificities ?

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# IC=11.337 IC/col=0.872 n_of_columns=13

specificity:

A |   0  79  75  24  90  24  11  73   0   0   0  96   0
C |   1   7   5  24   1  24   7   5  96   0  96   0  96
G |   5   5   5  24   5  24  73  13   0   0   0   0   0
T |  90   5  11  24   0  24   5   5   0  96   0   0   0

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updated Mon Dec 18 05:52:49 2023