1par_ABCD : 3D-footprint complex

structure name	DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE
reference	Raumann et al. Nature 367 754 1994
source	ENTEROBACTERIA PHAGE P22
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Ribbon-helix-helix;
reference complex	1bdt_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1par_A interface=4,9,11,13, mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegrig > 1par_B interface=4,9,11,13, mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga > 1par_C interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr > 1par_D interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga
interface signature	MQNR/MQNR/MSQNR/MSQNR

Estimated binding specificities ?

readout + contact

# IC=15.671 IC/col=0.825 n_of_columns=19

specificity:

A |   0  27  17   0  96   0  87  24  24  24  24  13   0   0   0  96  82   0  96
C |   0   3  13   0   0   0   3  24  24  24  24  13   3  96   0   0   3  96   0
G |   0  56  49   0   0  96   3  24  24  24  24  16   1   0   0   0   1   0   0
T |  96  10  17  96   0   0   3  24  24  24  24  54  92   0  96   0  10   0   0

scan!

home
updated Fri Dec 15 10:42:39 2023