1p8k_Z : 3D-footprint complex

structure name	THE STRUCTURE AND DNA RECOGNITION OF A BIFUNCTIONAL HOMING ENDONUCLEASE AND GROUP I INTRON SPLICING FACTOR (Intron-encoded endonuclease I-AniI)
reference	Stoddard et al. 'Genes 17 2875 2003
source	Emericella nidulans
experiment	X-ray (resolution=2.60, R-factor=0.247)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
reference complex	2qoj_Z
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1p8k_Z interface=18,20,22,24,27,29,35,59,61,64,66,70,72,150,152,154,156,162,164,166,168,170,192,198,200,202,204,243, gsdltyaylvglfegdgYfSiTkKgkYlTyelgiElsikdvqliykikkilgigivsfRkRneIeMvalRiRdknhlksfilpifekypmfsnkqydylrfrnallsgiisledlpdytrsdeplnsiesiintsyfsawlvgfieaegCfSvYkLnkdddYlIaSfDiAqrdgdilisairkylsfttkvYldktnCsKlKvTsvrsveniikflqnapvkllgnkklqyllwlkqlrkisRysekikipsny
interface signature	YSTKYTERRIMRRCSYLYISDAYCKKTR

Estimated binding specificities ?

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# IC=20.071 IC/col=1.004 n_of_columns=20

specificity:

A |   4   4  78   0   0  96   0   0  91  24  24   0   0   0   0   0   1  96  78  84
C |   6   6   6   0   0   0   0   0   0  24  24   5   0  96   0   0   8   0   4   4
G |   4  82   4  96  96   0  96  96   0  24  24   0   0   0   0  83   0   0  10   4
T |  82   4   8   0   0   0   0   0   5  24  24  91  96   0  96  13  87   0   4   4

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updated Mon Dec 18 05:47:52 2023