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3D-footprint cannot reliably estimate the specificity of proteins that bind to single-stranded DNA molecules, as these often accumulate many base contacts which distort the calculations.

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updated Mon Dec 18 05:47:31 2023

structure name	THE STRUCTURES OF HOST RANGE CONTROLLING REGIONS OF THE CAPSIDS OF CANINE AND FELINE PARVOVIRUSES AND MUTANTS (Coat protein VP2)
reference	Agbandje-McKenna et al.
source	Canine parvovirus
experiment	X-ray (resolution=3.30, R-factor=0.200)
structural superfamily	ssDNA viruses;
sequence family	Parvovirus coat protein VP2;
reference complex	4dpv_Z
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1p5w_A interface=105,107,137,139,142,204,223,226,227,452,453,455, gvgistgtfnnqtefkflengwveitanssrlvhlnmpesenyrrvvvnnmdktavrgnmalddihaqivtpwslvdanawgvwfnpgdwqlivntmselhlvsFeQeifnvvlktvsepptkvynndltaslmvaLdSnnTmpftpaamrsetlgfypwkptiptpwryyfqwdrtlipshtgtsgtptniyhgtdpddvqfYtiensvpvhllrtgdefaTgtFFfdckpcrlthtwqtnralglppflnslpqsegatnfgdigvqqdkrrgvtqmgntnyiteatimrpaevgysapyysfeastqgpfktpiaagrggaqtdenqaadgnpryafgrqhgqkttttgetperftyiahqdtgrypegdwiqninfnlpvtndnvllptdpiggktginytnifntygpltalnnvppvypngqiwdkefdtdlkprlhvnapfvcqNNcPgqlfvkvapnltneydpdasanmsrivtysdfwwkgklvfkaklrashtwnpiqqmsinvdnqfnyvpsniggmkivyeksqlaprkly