1n6j_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RECRUITMENT OF HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2
reference	Stroud et al. Nature 422 730 2003
source	HOMO SAPIENS
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	SRF-like;
reference complex	1n6j_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1n6j_A interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrrgig > 1n6j_B interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr
interface signature	RK/RK

Estimated binding specificities ?

readout + contact

# IC=6.872 IC/col=0.687 n_of_columns=10

specificity:

A |  42   0  96  24  24  24  42   0  96   0
C |  23   0   0  24  24  24  21   0   0   0
G |  10   0   0  24  24  24  21   0   0  96
T |  21  96   0  24  24  24  12  96   0   0

scan!

home
updated Fri Dec 15 09:50:23 2023