1n3f_GH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNA SEQUENCE II (PALINDROME OF RIGHT SIDE OF WILDTYPE DNA TARGET SEQUENCE)
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1n3f_G interface=20,22,24,26,28,30,31,36,38,42,44,64,66,68,71,137,138, tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvrav > 1n3f_H interface=20,22,24,26,28,30,31,36,42,44,64,66,68,71,137,138, tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvrav
interface signature	SIQKNSYQSQTYRRVKT/SIQKNSYQQTYRRVKT

Estimated binding specificities ?

readout + contact

# IC=24.933 IC/col=1.133 n_of_columns=22

specificity:

A |   6  96  96  83   0   0   0   0   0   6   3   6  74   0  96   0  96   0   4   0   0   3
C |   0   0   0   0  93   0   0   0  96   3  80   7   7   0   0  96   0   0  15   0   0  90
G |  87   0   0   9   0   0  96   0   0   4   9  77   6  96   0   0   0  96   3   0   0   3
T |   3   0   0   4   3  96   0  96   0  83   4   6   9   0   0   0   0   0  74  96  96   0

scan!

home
updated Fri Dec 15 09:49:32 2023