1n3f_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNA SEQUENCE II (PALINDROME OF RIGHT SIDE OF WILDTYPE DNA TARGET SEQUENCE)
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1n3f_A interface=20,22,24,26,28,30,31,36,42,44,64,66,68,71,137,138, tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvrav > 1n3f_B interface=20,22,24,26,28,30,31,36,38,42,44,64,66,68,71,137,138, tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvrav
interface signature	SIQKNSYQQTYRRVKT/SIQKNSYQSQTYRRVKT

Estimated binding specificities ?

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# IC=25.079 IC/col=1.140 n_of_columns=22

specificity:

A |   0  96  96  73   0   0   0   0   0   3   7   7  84   0  96   0  93   0   3   0   0   3
C |   0   0   0   6  96   0   0   0  96  11  75   3   6   0   0  96   0   0   9   0   0  88
G |  96   0   0  14   0   0  96   0   0   7   7  79   3  96   0   0   3  96   3   0   0   5
T |   0   0   0   3   0  96   0  96   0  75   7   7   3   0   0   0   0   0  81  96  96   0

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updated Fri Dec 15 09:49:14 2023