1mnm_ABCD : 3D-footprint complex

structure name	YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
reference	Richmond et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	SRF-like;Homeodomain-like;
reference complex	1mnm_A 1mnm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnm_A interface=5,16,20,24, qkerRkieikfienkTrrhVtfsKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapdd > 1mnm_B interface=1,17,20,21, RrkieikfienktrrhVtfSKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapd > 1mnm_C interface=20,23,66,69,70,73, glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1mnm_D interface=19,23,66,70,73, glvfnvvtqdminkstkpYrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt
interface signature	RTVK/RVSK/RRNSNR/YRNNR

Estimated binding specificities ?

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# IC=21.644 IC/col=0.902 n_of_columns=24

specificity:

A |   2   0   0  21  96  81  88   0   0   4   0   0  24  24  24  24   4  81   0   0   2  96  96   0
C |   4   1   0   1   0   4   4   0   0   7  96  96  24  24  24  24   4   4   1   0  23   0   0   8
G |   9   4  96   0   0   4   0   0   2   4   0   0  24  24  24  24   2   4  93  96   4   0   0   0
T |  81  91   0  74   0   7   4  96  94  81   0   0  24  24  24  24  86   7   2   0  67   0   0  88

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updated Fri Dec 15 09:47:54 2023