1m5x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Monomastix sp.
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1m5x_A interface=19,21,23,27,29,30,36,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 1m5x_B interface=19,21,23,25,27,29,30,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlIpRpDYkdikyqvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYKRDYQSIRRDIDTI/SYKIRDYSIRRDIDTI

Estimated binding specificities ?

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# IC=21.196 IC/col=0.963 n_of_columns=22

specificity:

A |   0  92   0  75  96   0   0   0   0   7  24  24  11   0  96   0  92   3  24   2   0  72
C |  96   1   0  11   0  96   0   0  96  10  24  24   3   0   0  96   1   3  24   3  96   7
G |   0   3  96   7   0   0  96   0   0  76  24  24   6  96   0   0   3  10  24   3   0   7
T |   0   0   0   3   0   0   0  96   0   3  24  24  76   0   0   0   0  80  24  88   0  10

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updated Fri Dec 15 09:45:07 2023