1l3l_BD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA
reference	Molyneaux et al. Nature 417 971 2002
source	Agrobacterium tumefaciens
experiment	X-ray (resolution=1.66, R-factor=?)
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	1l3l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1l3l_B interface=190,201,202,205,206,209,210, qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktMeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli > 1l3l_D interface=182,193,194,197,198,201, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflawldpkeatylrwiavgktMeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli
interface signature	MYNRVRE/MYNRVR

Estimated binding specificities ?

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# IC=10.918 IC/col=0.728 n_of_columns=15

specificity:

A |   8   8   0   0   0  78  24  24  24  24   4   4   0  96   4
C |   4   6   0   0  91   4  24  24  24  24   4   0  96   0  82
G |   6  65   0  96   1   8  24  24  24  24   8  91   0   0   6
T |  78  17  96   0   4   6  24  24  24  24  80   1   0   0   4

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updated Fri Dec 15 09:31:13 2023