1l3l_AC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA
reference	Molyneaux et al. Nature 417 971 2002
source	Agrobacterium tumefaciens
experiment	X-ray (resolution=1.66, R-factor=?)
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	1l3l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1l3l_A interface=190,201,202,205,206,209,210, qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktMeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli > 1l3l_C interface=182,193,194,197,198,201, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflawldpkeatylrwiavgktMeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli
interface signature	MYNRVRE/MYNRVR

Estimated binding specificities ?

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# IC=9.458 IC/col=0.676 n_of_columns=14

specificity:

A |   0   0   0  46  24  24  24  24   5   0   0  96  26  55
C |   0   0  96  15  24  24  24  24   5   0  96   0  55  10
G |   0  96   0  20  24  24  24  24   5  96   0   0   5  21
T |  96   0   0  15  24  24  24  24  81   0   0   0  10  10

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updated Fri Dec 15 09:31:29 2023