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legend  pdf

structure nameCRYSTAL STRUCTURE OF THERMUS AQUATICS RNA POLYMERASE SIGMAA SUBUNIT REGION 4 BOUND TO-35 ELEMENT DNA
(sigma factor sigA)
referenceTrester-Zedlitz et al. Mol.Cell 9 527 2002
sourceThermus aquaticus
experimentX-ray (resolution=2.40, R-factor=0.255)
structural superfamilySigma3 and sigma4 domains of RNA polymerase sigma factors;
sequence familySigma70, region 4;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureLTRERRQ

Estimated binding specificities ?

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# IC=6.292 IC/col=0.899 n_of_columns=7 specificity:   
A |   7   0   7   0  75   0  73
C |  73   0   7   0   7  96   7
G |   9   0   9  96   7   0   7
T |   7  96  73   0   7   0   9
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updated Mon Dec 18 05:15:53 2023