1ksx_ABEF : 3D-footprint complex

structure name	CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX
reference	Joshua-Tor et al. 'EMBO 21 1487 2002
source	Bovine papillomavirus
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	1ksy_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ksx_A interface=26,28,29,30, atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln > 1ksx_B interface=26,28,29,30, atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln > 1ksx_E interface=26,28,29,30, atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln > 1ksx_F interface=26,28,29,30, atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln
interface signature	NKTT/NKTT/NKTT/NKTT

Estimated binding specificities ?

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# IC=5.542 IC/col=0.308 n_of_columns=18

specificity:

A |  90   0  24  13  17  24  24  24  24  24  24  24  24  48  24  24  96   0
C |   4   0  24  15  15  24  24  24  24  24  24  24  24  18  24  24   0   0
G |   1   0  24  48  13  24  24  24  24  24  24  24  24  13  24  24   0   0
T |   1  96  24  20  51  24  24  24  24  24  24  24  24  17  24  24   0  96

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updated Fri Dec 15 09:20:15 2023