1jj4_AB : 3D-footprint complex

structure name	HUMAN PAPILLOMAVIRUS TYPE 18 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET
reference	Hegde et al. J.Biol.Chem. 275 31245 2000
source	Human papillomavirus type 18
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	1jj4_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jj4_A interface=12,15,16,19,20, mtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkflntvaipdsvqilvgymt > 1jj4_B interface=13,16,17,20,21, hmtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtektgiltvtyhsetqrtkflntvaipdsvqilvgymt
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

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# IC=14.575 IC/col=0.911 n_of_columns=16

specificity:

A |   3  81  96   0   0   3  24  67   3  24   3   0   0   0   3   3
C |  88   3   0  96  96   2  24  11   9  24  92   0   0   0   2   9
G |   2   7   0   0   0  88  24   7   7  24   0  96  96   0   3  73
T |   3   5   0   0   0   3  24  11  77  24   1   0   0  96  88  11

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updated Fri Dec 15 09:17:07 2023