1hjb_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
reference	Tahirov et al.
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	6mg1_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hjb_A interface=11,14,17,18,21,22, dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkq > 1hjb_B interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql > 1hjb_C interface=21,83,111,112,115,118, gelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitVDgpRepRrh
interface signature	RNAVSR/RNNAVSR/RRVDRR

Estimated binding specificities ?

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# IC=17.338 IC/col=0.913 n_of_columns=19

specificity:

A |   3  78  71   0   0  96   0  89  24  24  24   3   0   3   3   0  85  96  96
C |  75   9   6  96  96   0  96   1  24  24  24   3   0   3   3   0   3   0   0
G |   5   3   6   0   0   0   0   3  24  24  24   6   0   0  87  96   5   0   0
T |  13   6  13   0   0   0   0   3  24  24  24  84  96  90   3   0   3   0   0

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updated Fri Dec 15 09:09:35 2023