interface graph thumbnail
legend  pdf

structure nameHIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS
referenceDickerson et al.
experimentX-ray (resolution=2.30, R-factor=0.228)
structural superfamilyHomeodomain-like;
sequence familyHelixturnhelix domain of resolvase;
reference complex1jko_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSTYRIKKN

Estimated binding specificities ?

readout + contactlogo
# IC=11.112 IC/col=1.010 n_of_columns=11 specificity:   
A |   5   5   0   5  80   0   0  96  80  96  80
C |   6  80   0   5   6   0  96   0   5   0   5
G |   5   6   0   5   5   0   0   0   6   0   5
T |  80   5  96  81   5  96   0   0   5   0   6
scan!

home
updated Mon Dec 18 05:09:16 2023