1h9t_AB : 3D-footprint complex

structure name	FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR
reference	Van Aalten et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=3.25, R-factor=?)
structural superfamily	Fatty acid responsive transcription factor FadR, C-terminal domain;"Winged helix" DNA-binding domain;
reference complex	1h9t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h9t_A interface=31,40,41,42,45,46,61, aqspagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknllaiqgr > 1h9t_B interface=31,40,41,42,45,46,61, aqspagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknl
interface signature	RTRTREH/RTRTREH

Estimated binding specificities ?

readout + contact

# IC=9.562 IC/col=0.869 n_of_columns=11

specificity:

A |  10   0   0   5  24   0  10  74   0   0  90
C |  10   0   0  10  24  96  10   7  96  96   0
G |  12  96  96  10  24   0  58  10   0   0   6
T |  64   0   0  71  24   0  18   5   0   0   0

scan!

home
updated Fri Dec 15 09:08:11 2023