1gxp_AB : 3D-footprint complex

structure name	PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA.
reference	Gomis-Ruth et al. Structure 10 701 2002
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	2z33_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gxp_A interface=67,68,70,71,74,75,93, aveeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvDVhiRRlrkalepgghdrmvqtvRgtgyrfstrf > 1gxp_B interface=65,66,69,72,73,91, eeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvdVhiRRlrkalepgghdrmvqtvRgtgyrfstrf
interface signature	RTDVRRR/RTVRRR

Estimated binding specificities ?

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# IC=15.511 IC/col=0.816 n_of_columns=19

specificity:

A |   9   6  24  13   0  96   0  85  24   0   0   6   0  24  24   6  96   0  96
C |  75  78  24  13   0   0  96   3  24  96   0   6   0  24  24   9   0  96   0
G |   6   3  24  13  92   0   0   3  24   0   0   9   0  24  24  75   0   0   0
T |   6   9  24  57   4   0   0   5  24   0  96  75  96  24  24   6   0   0   0

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updated Fri Dec 15 09:06:15 2023