1gtw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER
reference	Tahirov et al.
source	HOMO SAPIENS
experiment	X-ray (resolution=1.85, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	6mg1_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gtw_A interface=11,14,17,18,21,22, dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk > 1gtw_B interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql
interface signature	RNAVSR/RNNAVSR

Estimated binding specificities ?

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# IC=10.661 IC/col=1.066 n_of_columns=10

specificity:

A |  21   0   0   0   0   0   1  96  96  10
C |  10   0   0   0  96   0  10   0   0  23
G |  55   0  96  96   0  96   0   0   0  21
T |  10  96   0   0   0   0  85   0   0  42

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updated Fri Dec 15 09:05:52 2023