1gt0_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX
reference	Wilmanns et al. 'Genes 17 2048 2003
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;HMG-box;
reference complex	1o4x_A 1o4x_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gt0_C interface=41,42,43,46,47,84,126,129,130,133, psdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaenlglsrrrkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekr > 1gt0_D interface=5,8,10,11,18,30,31,34,72,76, drvkRpmNaFMvwsrgqRrkmaqenpkmhNSeiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprRktk
interface signature	SQTSRRVSNQ/RNFMRNSSYR

Estimated binding specificities ?

readout + contact

# IC=18.089 IC/col=1.005 n_of_columns=18

specificity:

A |   0   0   0   0  15   0  24  24   7   7  96   0   0   0   0  73  96   7
C |  96   0   0   0   0   0  24  24   7   7   0   0   0  96   7   7   0   0
G |   0   0   0   0  81   0  24  24  75  75   0   0  96   0   1   9   0   1
T |   0  96  96  96   0  96  24  24   7   7   0  96   0   0  88   7   0  88

scan!

home
updated Fri Dec 15 09:05:39 2023