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structure nameSTRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)
(TATA BOX ZINC FINGER PROTEIN)
referenceElrod-Erickson et al.
sourceMus musculus
experimentX-ray (resolution=2.00, R-factor=?)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
redundant complexes1g2d_F
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQTNQSTHTR

Estimated binding specificities ?

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# IC=12.896 IC/col=1.172 n_of_columns=11 specificity:   
A |  20   0   0   0   0  77   0  96   0   0   0
C |  38   0   0   0   0   0   0   0   0  96   0
G |  19   0   0   0   0   0   0   0  96   0  96
T |  19  96  96  96  96  19  96   0   0   0   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: FINGER
ATTTAPubMed1g2f_F(6.15e-03)
AATAAAPubMed1g2f_F(1.23e-04)
CTTATPubMed1g2f_F(6.15e-03)
TAAAAAPubMed1g2f_F(1.23e-04)
AAAAAPubMed1g2f_F(6.15e-03)
term: TATA
TATAAAPubMed1g2f_F(7.00e-08)
TATAAAAGPubMed1g2f_F(2.81e-08)
TATAAAAPubMed1g2f_F(8.05e-10)
TGTAAAPubMed1g2f_F(1.00e-03)
TATAAPubMed1g2f_F(1.29e-05)
TTTATAPubMed1g2f_F(7.00e-08)
CATAAAPubMed1g2f_F(1.23e-04)
TATATAAPubMed1g2f_F(4.44e-05)
CATAAAAPubMed1g2f_F(2.64e-06)
TATAAGPubMed1g2f_F(1.40e-04)
TCACTATATATAGPubMed1g2f_F(1.57e-03)
CATAAAACPubMed1g2f_F(2.84e-05)
TATATAPubMed1g2f_F(1.44e-03)
CTTTTPubMed1g2f_F(6.15e-03)
CTATAAAAGPubMed1g2f_F(1.54e-10)
ATATAAPubMed1g2f_F(1.40e-04)
TATAAATPubMed1g2f_F(3.04e-06)
TATCAAPubMed1g2f_F(1.00e-03)
TCTTATPubMed1g2f_F(9.00e-04)
TAAAAGCPubMed1g2f_F(1.17e-03)
TCATAGAPubMed1g2f_F(6.02e-03)
TACAAAAGPubMed1g2f_F(2.16e-04)
TATAAGTPubMed1g2f_F(1.29e-03)
CATATAAPubMed1g2f_F(1.29e-03)
TTATATAPubMed1g2f_F(4.44e-05)
CGTATAACPubMed1g2f_F(5.17e-03)
TAAATPubMed1g2f_F(6.15e-03)
AATAAAAGPubMed1g2f_F(2.84e-05)
TATAGATAPubMed1g2f_F(4.76e-03)
TATAATPubMed1g2f_F(1.40e-04)
TAAAAPubMed1g2f_F(1.10e-05)
TATAAGCPubMed1g2f_F(1.29e-03)
TATAAACGPubMed1g2f_F(3.20e-05)
TAAAAGTPubMed1g2f_F(1.17e-03)
TATAAGAGPubMed1g2f_F(2.16e-04)
sitesourcematches (E-value)

Dendrogram of similar interfaces ?

matrix format
  
  --RGDC--SCHG----DC--SANA----WC--SCVG--RG--   L         +--------------------------5v3g_A    
                                                         !  
  ----QA--TCNA----QAHTTT--QA--TTLAHGTCDTRG--   L         !                               +1g2d_F    
                                                         !                             +-5 
  ----KG--WTKA--------HCHGRG--TA--ACNA--KGRG   L         !                             ! ! +1tf6_A    
                                                         !                    +--------6 +-1 
  --NGKT--WTKG--------HTHGRGTGTT--ACNA--KGRG   L         !                    !        !   +1tf3_A    
                                                         !                 +--8        ! 
  ----RGSTDAHARG--RGSTDCHGTT--RG--DAEG--RG--   L         !                 !  !        +5kl3_A    
                                                         !              +-10  ! 
  ------------KT--EC--SCKGRG--LT--FCNA------   L      +-16              !  !  +---------1ubd_C    
                                                      !  !           +-11  !  
  --------------RGST--YGYC----QC--TGSTRGYT--          !  !           !  !  +------------4is1_C    
                                                      !  !      +---13  !  
  ----RA----NC------ATSGDCKG--DCPTSGSARTKG--   L      !  !      !    !  +-------------2gli_A    
                                                      !  !   +-14    !  
  ----EC--SCKGRG----TCYCKARG--QA----TC------          !  !   !  !    +----------------5yeg_A    
                                                      !  !   !  !  
  ----------YG----WT--WTSTET--FTVASGDCSART--   L      !  !   !  +---------------------6a57_A    
                                                      !  !   !  
  ----RGSTDTEGRG--RGSGDCHGTT--RG--DAEG--RG--   L      !  +--15           +----------4x9j_A    
                                                   +-17      !           ! 
  ----DA--SCHGRGRGDC--SCNA----NCKTSAHG--RG--   L   !  !      !      +----9            +5ei9_F    
                                                   !  !      !      !    !          +-3 
  --------STQTLTITST--STHTRG--RG----EA--RA--   L   !  !      !      !    +----------4 +5v3j_F    
                                                   !  !      +-----12               ! 
  ----VT----NARG------ETTG----YG--ST--------       !  !             !               +6e94_A    
                                                   !  !             !  
  FA--RGSGSCTCTAHCQA--STDCKT--QASGSANAIGTT--   L -18  !             !               +2kmk_A    
                                                   !  !             +---------------2 
  ----EC--SGKGRG--DG--YCKGRG--QA----TC------   L   !  !                             +5k5h_A    
                                                   !  !  
  ----EC--SCKGRG----TCYCKARGTCQAST--TC------   L   !  !                  +-------5yef_B    
                                                   !  +------------------7 
  ----DC--YCKGRG--QA----TC----RC--SCDC--VT--   L   !                     +-------5k5i_A    
                                                   !  
  ----KT--STHT----RG--DAQARG--RGSTDCHG--TT--   L   +-----------------------------6b0o_A

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updated Tue Dec 19 05:39:08 2023