interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF TRANSCRIPTIONAL FACTOR ALCR IN COMPLEX WITH A TARGET DNA
(ETHANOL REGULON TRANSCRIPTIONAL FACTOR)
sourceEMERICELLA NIDULANS
experimentNMR
structural superfamilyZn2/Cys6 DNA-binding domain;
sequence familyFungal Zn2Cys6 binuclear cluster domain;
redundant complexes1f5e
reference complex1f5e_P
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureMRRRKRRRW

Estimated binding specificities ?

readout + contactlogo
# IC=9.594 IC/col=1.066 n_of_columns=9 specificity:   
A |  14  96   0   0   0   0   7  96   7
C |  13   0   0  96  96   0  74   0  81
G |  56   0   0   0   0  96   7   0   4
T |  13   0  96   0   0   0   8   0   4
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: ALCR
CCGCAPubMed1f4s_P(3.98e-06), 1f5e_P(1.62e-06)
CCGCNPubMed1f4s_P(3.10e-03), 1f5e_P(1.77e-03)
TGCGGPubMed1f4s_P(3.98e-06), 1f5e_P(1.62e-06)

home
updated Mon Dec 18 05:05:02 2023