1f4k_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEX
reference	Hastings et al. Nat.Struct.Biol. 8 206 2001
source	Bacillus subtilis
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1f4k_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1f4k_A interface=9,28,46,47,48,49,51,52, stgflvkqRaflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf > 1f4k_B interface=9,28,46,47,48,49,51,52, stgflvkqRaflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf
interface signature	RLNHTEYR/RLNHTEYR

Estimated binding specificities ?

readout + contact

# IC=13.624 IC/col=0.908 n_of_columns=15

specificity:

A |   0   0  66  96   0  96  24  24  24   0   0   0  21   0  96
C |   0   0  10   0  96   0  24  24  24   0   0   0  12  96   0
G |  11  96  10   0   0   0  24  24  24   0  96   0  10   0   0
T |  85   0  10   0   0   0  24  24  24  96   0  96  53   0   0

scan!

home
updated Fri Dec 15 08:57:50 2023