1cyq_AB : 3D-footprint complex

structure name	INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX
reference	Stoddard et al. Nat.Struct.Biol. 6 1096 1999
source	Physarum polycephalum
experiment	X-ray (resolution=1.93, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	1a73_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cyq_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 1cyq_B interface=54,56,60,62,64,66,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTRLK

Estimated binding specificities ?

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# IC=20.343 IC/col=1.017 n_of_columns=20

specificity:

A |  10   0  36   0   0   0   1   5   3   0  94  78   2  19   0  96   0  24   0  96
C |   5   0   5  96   0  96  65  85   5   4   0   5   3   1   0   0   0  24  96   0
G |   7  96  48   0   0   0   0   5   3   0   2   8  90  76  96   0  96  24   0   0
T |  74   0   7   0  96   0  30   1  85  92   0   5   1   0   0   0   0  24   0   0

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updated Fri Dec 15 08:45:51 2023