1cqt_BJ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT
reference	Chasman et al.
source	HOMO SAPIENS
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	1cqt_I 1o4x_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cqt_B interface=38,39,40,41,43,44,50,54,74,115,118,119,122, dleeleqfaktfkqrriklgftqgdvglamgklyndfSQTTiSRfealnLsfkNmcklkpllekwlndaerkkRtsietnirvaleksflenqktseeitmiadqlnmekevirVwfCNrrQkekrinp > 1cqt_J interface=7, arpyqgVrvkepvkellrrkrgh
interface signature	SQTTSRLNRVCNQ/V

Estimated binding specificities ?

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# IC=10.669 IC/col=1.067 n_of_columns=10

specificity:

A |   0  96   9   9   0  96  96  96   0  67
C |   0   0  11   9  96   0   0   0   0   9
G |   0   0   9  69   0   0   0   0   0  11
T |  96   0  67   9   0   0   0   0  96   9

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updated Fri Dec 15 08:45:44 2023