interface graph thumbnail
legend  pdf

structure nameEBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
referenceBochkareva et al.
sourceHuman herpesvirus 4
experimentX-ray (resolution=2.20, R-factor=?)
structural superfamilyViral DNA-binding domain;
reference complex7u1t_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKWFRNKFKTYNR/KWFRKFKTYNR

Estimated binding specificities ?

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# IC=18.654 IC/col=1.036 n_of_columns=18 specificity:   
A |   1   0   0  96  93   1   1  61   1  91  24   3   5   0   0   0   0   0
C |   3   0   0   0   1   6  86  23  11   1  24   1  71   1   0  96  96  96
G |  88  96  96   0   1  88   1   7   1   1  24  91   9   3   0   0   0   0
T |   4   0   0   0   1   1   8   5  83   3  24   1  11  92  96   0   0   0
scan!

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updated Fri Dec 15 08:39:11 2023