#http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE53197
#BioProject		PRJNA231088
#SRA	SRP033660

# In each folder:

cat > SRA.list

wget -c -nv -i SRA.list 

sratoolkit.2.4.2-ubuntu64/bin/fastq-dump --gzip --split-files *.sra

zcat SR*gz | perl -lne 's/^(\S)SRR\S+ /$1/; s/ length=\d+/\/1/; print' | gzip > 1.fq.gz

rm -f SR*

trinityrnaseq-2.0.2/Trinity --seqType fq --single 1.fq.gz \
  --CPU 10 --max_memory 40G --trimmomatic --full_cleanup --output trinity --normalize_reads

transcripts2cdsCPP.pl -n 50 Trinity.fasta