DNA Binding Motif

						

			
Accessions: 2or1_LR (3D-footprint 20231221)

			
Names: 434 REPRESSOR
Organisms: Phage 434
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION
Length: 16
Consensus: TACAAnnTnTnTTGTA
Weblogo: 
PSSM: P0      A      C      G      T
01      5      5      6     80      T
02     80      6      5      5      A
03      0     96      0      0      C
04     96      0      0      0      A
05     96      0      0      0      A
06     24     24     24     24      n
07     24     24     24     24      n
08      5      5      5     81      T
09     24     24     24     24      n
10      5      5      5     81      T
11     24     24     24     24      n
12      6      5      5     80      T
13      0      0      0     96      T
14      0      0     96      0      G
15      0      0      0     96      T
16     81      5      5      5      A
Binding TFs: 2or1_L / 2or1_R (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 2or1_A
2or1_B
			
Publications: Aggarwal A.K, Rodgers D.W, Drottar M, Ptashne M, Harrison S.C. Recognition of a DNA operator by the repressor of phage 434: a view at high resolution. Science (New York, N.Y.) 242:899-907 (1988). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.