DNA Binding Motif

Accessions: 4z5d_AB (3D-footprint 20231221)
Names: Antitoxin HipB
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: HipB-O4 21mer complex
Length: 18
Consensus: TAtCCrnnnnnnnGGwTA
Weblogo:
PSSM: P0 A C G T
01 3 3 3 87 T
02 96 0 0 0 A
03 9 14 15 58 t
04 0 96 0 0 C
05 0 96 0 0 C
06 37 9 40 10 r
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 24 24 24 24 n
14 0 0 96 0 G
15 0 0 96 0 G
16 46 6 20 24 w
17 0 0 0 96 T
18 83 4 3 6 A
Binding TFs: 4z5d_A / 4z5d_B (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4z5d_C
4z5d_D

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.