(updated: Thu Dec 21 15:15:22 2023)
In these diagrams sets of entries from the database are clustered to show their interface (left) and overall structural (right) similarity. Mouse over complex names to check their SCOP superfamilies and click on the L links to see their structure-based sequence logos. Please check the help page for more details.
> 1dux_F:ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION
----ECKT--RGATRGHTRA L +---4mhg_A +-1 ------KT--RG--RGYT-- L +-------------------2 +---4bqa_A ! ! ------KT--RG--RGYA-- L --3 +-----4l18_B ! ITRGECSCSGKG-------- L +-------------------------5i2d_R |
> 1emh_A:CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
--------PTLA------ +1emh_A +---1 --------PALA------ +-------------------2 +4uqm_A ! ! KT----TT------RA-- --3 +---4yig_E ! --SGKT--CGACQT--PG L +-----------------------5hf7_A |
> 1fiu_B:TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA
DCSC------QC------------RGSGDCRG--RG L +------------------1fiu_B +------1 ----NGACKG------------SGRGSADCRG---- +-2 +------------------3dvo_D ! ! --------------SCNGNG--SGRG----RG---- L +-3 +-------------------------3v1z_B ! ! ------------RG------------------VT-- L --4 +--------------------------3hxo_A ! --------------------RAKGRGECRG------ L +---------------------------3bm3_A |
> 1hry_A:THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID- DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR
RTNGFTIARA--NASG--STYA L +-----------------------------1j47_A ! --NAFTIARC----SGICSTYA L --3 +1hry_A ! +---------------1 RTNGFTMART--NTAT--SAYA L +-------------2 +6t78_A ! RCNGFTMARTHTNG----STYA L +---------------6t90_L |
> 1if1_B:INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA
----NASTRGHT--ST-- L +-----------------------------2uzk_A +-3 ----NASTRTHT--ST-- L ! +-----------------------------3l2c_A --4 --KTRG----RGYA---- L ! +-4l18_B ! +---1 --KTRG----RGYT---- L +-----------------------2 +-4bqa_A ! ECKTRGAT--RGHT--RA L +-----4mhg_A |
> 1jfi_B:CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX
RAAANA----RT +----------1jfi_B +-----------4 --IT-------- ! ! +------6r8y_H ! +---2 ------RA---- ! +------7xsx_a +-6 --LT----RG-- ! ! +8eue_E ! ! +--------1 ------RT---- ! ! +---------3 +7wlr_E +-7 ! ! ! ------RT---- ! ! +--5 +---------7lyb_G ! ! ! --LT--RC---- +-8 ! +-------------------5xm1_A ! ! ! ------RG---- ! ! +------------------------7e9c_G --9 ! ------RA---- ! +-------------------------6t7a_C ! ------RG---- +---------------------------5t5k_E |
> 1k3x_A:CRYSTAL STRUCTURE OF A TRAPPED REACTION INTERMEDIATE OF THE DNA REPAIR ENZYME ENDONUCLEASE VIII WITH BROMINATED-DNA
--QALGYA------------RG +-1k3x_A +----------2 RT--MG----RC--FC----RT L ! +-6tc9_A ! --RTMT----RC--------RT +---6 +---6fl1_A ! ! +-----3 --RA--------FT------RA ! ! ! ! +3gpu_A ! ! ! +---1 --RGMG------FC------RG L ! +--5 +3u6p_A --7 ! ----MG--ITRC--FG--HGRG L ! ! +------5itu_A ! +--4 ----MG--ITRC--FG----RG ! +------6lwd_G ! ----MG------RG--FG--RG +----------------3twm_A |
> 1k82_A:CRYSTAL STRUCTURE OF E.COLI FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FPG) COVALENTLY TRAPPED WITH DNA
RA--MG----RCFCKGDGACQTRG L +-1k82_A +-2 --RTMT----RCFA--------RT +--------4 +-6fl1_A ! ! RT--MG----RCFC--------RT L ! +---6tc9_A +-6 --RGMG----RCFC--------RG L ! ! +3u6p_A ! ! +-1 --RA------RGFT--------RA ! +----------3 +3gpu_A --7 ! --QALGYA--------------RG ! +-1k3x_A ! ----MG----RGFG--------RG ! +--------3twm_A +-----5 ----MG--ITRCFG----HG--RG L +--------5itu_A |
> 1l3l_A:CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA
--YTNT--RGVT--RTET L +-------------------1l3l_A +----1 TC--KTTCKGTCHTST-- L +-2 +-------------------7ve5_B ! ! ----KGTCKGTCHT---- L --3 +------------------------4wuh_B ! ----SCTAKTVCHTKG-- L +--------------------------1je8_F |
> 1qzh_E:CRYSTAL STRUCTURE OF POT1 (PROTECTION OF TELOMERE)- SSDNA COMPLEX
--------------------STTT--DT--------QC--HCFAKT------------TGRAYC--QCLG--KGDGQG L +1qzh_E +-------1 --------------------STTT--DT--------QC--HCFTKT------------TGRCYC--QCLG--KGDG-- L +-------------2 +7cuh_A ! ! --NG----------------STTT--DT--------QC--HCFA--------------TGRGYCRCQCLGSGKGDG-- +--4 +-------6bwy_A ! ! ----------DGTGFGYGKT--------YTKG--------------FG--IG--HG----RGYG--QG---------- L +-5 +---------------------2i0q_A ! ! --------KGFG--------ST--TTDT--TG----TG--LAFA----------------QGYG--QGIA-------- L ! ! +-------------------3kjp_A +-6 +----3 EGTGYG--------------------------------KG------------------KT--YG-------------- L ! ! +-------------------1s40_A --7 ! ----KTNT----------------------TTATTTWT--RT----RTIT--YT--ET-------------------- L ! +-------------------------6irq_A ! --------------KC-------------------------------------------------------------- +---------------------------3rn5_C |
> 1sax_A:THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA
------------KGTA----TA----RG-------------- L +------------1xsd_A +--------1 RGRT------------------------------YGKC---- L +--2 +------------6lui_A ! ! ----SGQG--YCNC---------------------------- +-3 +---------------------2ve9_C ! ! --------DCLT--AG--TTRG----RG----------RA-- L +-4 +------------------------5h3r_A ! ! --------TG------QAAT--SARG---------------- L +-5 +-------------------------2p5l_D ! ! ----YC--KTHGSTQT--YTPT------------------LG L +-6 +--------------------------5x11_A ! ! ------------------NASTRGHT--ST------------ L +-7 +---------------------------3g73_A ! ! ------------------------YG---------------- +-8 +---------------------------2heo_D ! ! ------------------NASTRGHTNTSTLT---------- L +-9 +---------------------------7fj2_B ! ! ------------NT----TA---------------------- L +-10 +---------------------------5zux_A ! ! ------------DCKT----RG--RGYA-------------- L +-11 +----------------------------1dux_F ! ! --------------------ST--RTQT--KG---------- -12 +-----------------------------5d5w_B ! ------------TTHT----KG----------RC-------- L +-----------------------------7b0c_A |
> 1u35_G:CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
--RC +---6qld_f +---4 LGRA L ! +---8he5_a +----5 --RA ! ! +7xsx_a ! ! +-1 LT-- +--6 +------3 +7ywx_E ! ! ! --RG ! ! +7uv9_E +-7 ! LARG ! ! +------------7unc_a ! ! LC-- +--8 +---------------8bvw_e ! ! LTRC ! ! +3kwq_E --9 +----------------2 --RT ! +8siy_G ! --RT +--------------------8cww_A |
> 1vfc_A:SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2
RA----------------KGSAQA-- L +-----------------------------6j5b_C +-1 ----------SGVTSCSGNTRTRT-- L +-2 +-----------------------------6pax_A ! ! --LAHAKARA---------------- --3 +-----------------------------6dta_A ! RT------------------IAKGNA L +-----------------------------2hdd_A |
> 1xsd_A:CRYSTAL STRUCTURE OF THE BLAI REPRESSOR IN COMPLEX WITH DNA
------------KGTA----TA------RG-------------- L +1xsd_A +-----------1 ------------KTTA--RTTALT----RG-------------- L +-----2 +1sax_A ! ! RGRT------------------------------YGKC------ L +--3 +------------6lui_A ! ! ----SGQG--YCNC------------------------------ +-4 +------------------2ve9_C ! ! --------DCLT--AG--TTRG------RG------------RA L +-5 +---------------------5h3r_A ! ! ----YC--KTHGSTQT--YTPT------------------LG-- L +-6 +-----------------------5x11_A ! ! --------------TGQAAT----SARG---------------- L +-7 +------------------------2p5l_D ! ! ------------------NAST--RGHT--ST------------ L +-8 +-------------------------3g73_A ! ! ------------------NAST--RGHTNTSTLT---------- L +-9 +-------------------------7fj2_B ! ! ------------NT----TA----------------RT------ L +-10 +--------------------------5zux_A ! ! ------------DCKT----RG----RGYA-------------- L +-11 +--------------------------1dux_F ! ! --------------------------YG---------------- +-12 +--------------------------2heo_D ! ! ------------------------------------------RT -13 +----------------------------3gfi_A ! ----TC--STKTPTTT--FT------------------RT---- +----------------------------4ass_H |
> 1z9c_A:CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
------DCSA--TA--TT--------RT--RA-- L +1z9c_A +--------------2 ------LTRTPTNA--VT------------RT-- L +----4 +6c2s_C ! ! NT----KTPTQGSC--NTKA------------RT +---5 +--------------5bmz_B ! ! --NG--LTKTPTST--TT--------RT--RT-- L ! ! +7el3_B +-6 +-------------------1 ------DCLT--AG--TTRG------RG--RA-- L ! ! +5h3r_A +-8 ! --ET----RGTCTG--STRG----------KT-- L ! ! +-----------------------6q2b_B +-9 ! ------TT--PTTC--STNT----------RT-- L ! ! +------------------------4lln_I ! ! --------SANCTG--TTPT----------RT-- L ! +-------------------------5hlg_E +-10 ------ETQTPTSC--VTRG----------RT-- L ! ! +3q5f_A ! ! +----------------------3 --------RGTCTA----RGNT--------RT-- L +-11 +--7 +4fx4_B ! ! ! ----------------------------KG---- ! ! +-----------------------7o4j_W +-12 ! ------------------------------RT-- ! ! +---------------------------3gfi_A +-13 ! --TC--STKTPTTT--FT------------RT-- ! ! +---------------------------4ass_H +-14 ! --SGQG--YCNC---------------------- ! ! +----------------------------2ve9_C +-15 ! ------------------------YG-------- ! ! +----------------------------2heo_D -16 ! ----------TA--KTVCHT--KG---------- L ! +----------------------------1je8_F ! ------TC--TC--KGTC----ST---------- L +----------------------------7ve5_B |
> 2agp_B:FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND PYROPHOSPHOROLYSIS
----VTFT----AT------PC----------ST----------LA--------RART--RG +-----------------------------1jx4_A +-5 ----VC------AC------------------------------LG----SC--------RA +-6 +-----------------------------4fbt_A ! ! ----VT------AT------PC----------------------LA----------RT--RA ! +-----------------------------4ruc_A ! ------FT------------PT----------ST----------LT--IT------RG--RA ! +2agp_B --7 +---------------1 FCYC----------TTAT----SCICDCEC--ST----------------SG----RC--RT ! +----2 +4tqr_A ! ! ! ----QT--WA------RTST--------------ST--PATA----LT----RG--MTFT-- ! +-------3 +---------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG------------------ +-4 +--------------------6x6z_A ! ------------------------------KT------------------------------ +----------------------------7c97_K |
> 2drp_D:THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION
--QA----TC----RA--SCDC--VT-- +-----------------------------5yeg_A +-1 ------HTHGRGTGTT--ACNA--KGRG L +-2 +-----------------------------1tf3_A ! ! --EC--SCKGRG--LT--FCNA------ L +-3 +-----------------------------1ubd_C ! ! --RGSTDCHGTT--RG--DAEG--RG-- L +-4 +-----------------------------6b0o_A ! ! --QAHTTT--QA--TTLAHGTCDTRG-- L +-5 +-----------------------------1g2d_F ! ! RGST--YGYC----QC--TGSTRGYT-- --6 +-----------------------------4is1_C ! --RGSTDCHGTT--RG--DAEG--RG-- L +-----------------------------5kl3_A |
> 2fr4_B:STRUCTURE OF FAB DNA-1 COMPLEXED WITH A STEM-LOOP DNA LIGAND
----SCYA--------YT----YCRC-- +2fr4_B +---------------1 ------------------NG--YA---- +----2 +7tqb_H ! ! --------------------------YA --3 +---------------3vw3_H ! TGTGNGYTNGWGNTTTYTTTYG----WG +--------------------7v5n_B |
> 2fr4_L:STRUCTURE OF FAB DNA-1 COMPLEXED WITH A STEM-LOOP DNA LIGAND
----YTYTNTEC--HTYT------ +-2fr4_L +-------------------2 NAYAYA--TA--SA------HA-- ! ! +3vw3_L --3 +-1 ----------ST----------WG ! +7v5n_E ! ------------------YA---- +---------------------3vw3_H |
> 2i0q_A:CRYSTAL STRUCTURE OF A TELOMERE SINGLE-STRAND DNA-PROTEIN COMPLEX FROM O. NOVA WITH FULL-LENGTH ALPHA AND BETA TELOMERE PROTEINS
------DGTGFGYGKT--------YT----KG------------------------FG--IGHG--RGYGQG--------------DGDGDGYGTG--LGLGKGPGRGRGSG----------STHTYT-- L +--------------------2i0q_A +------2 ----------------STTT--DT------------------QC--HCFA--KT----------TGRAYCQCLG--KGDGQG------------------------------------------------ L ! ! +-------1qzh_E +-3 +------------1 ----KGFG--------ST--TTDT------------------TG--LAFA----------------QGYG--QGIA----------YT------------------------------------------ L ! ! +-------3kjp_A +-4 ! --------------------------------------------------------------------------------------QT--------RT----------LT--TTKT--FTQT------HT ! ! +---------------------------4gnx_B --5 ! VCNC--------RC------------VCNCTCACSCTCECWC--RC----FC--ECVCYC----------------NCVC--TCQC-------------------------------------------- L ! +----------------------------1eyg_D ! --------------------------------------------------------------------------------------------------------------------KTFT---------- L +----------------------------6i52_B |
> 2i0q_B:CRYSTAL STRUCTURE OF A TELOMERE SINGLE-STRAND DNA-PROTEIN COMPLEX FROM O. NOVA WITH FULL-LENGTH ALPHA AND BETA TELOMERE PROTEINS
--KTEGPGHGLGFG------FGYG------YGRGKG L +-----------------------------1jb7_B +-2 ----EGPGHGLGFG------FGYT------YTRTKT L ! +-----------------------------1ph6_B --3 --KTEGPGHGLGFG------FGYG------YTRGKG L ! +---------------------2i0q_B +-------1 QT------------RTLTTT----QTSTHT------ +---------------------4gnx_B |
> 2ihn_A:CO-CRYSTAL OF BACTERIOPHAGE T4 RNASE H WITH A FORK DNA SUBSTRATE
--IG--STTGLTVA------------NCSGKCFGNGKAKANAKASA--STWTECFCHA----MAHT----RTKCLCNGSC +------------2ihn_A +----------2 ----------FCRT--KCHANGSA--------------LT------KC----------FTFC----RTLA---------- L ! +------------5hp4_A --3 IT--YTQT--KT-------------------------------------------------------------------- ! +4q0w_A +-----------------------1 ------------AGVG--QC----QCMC---------------------------------------------------- +5zoe_A |
> 2irf_L:CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.
ECKTRGAT--RGHT--RA L +---4mhg_A +-------------------------1 --KTRG----RGYT---- L +-2 +---4bqa_A ! ! ----NASTRGHT--ST-- L --3 +-----------------------------2uzk_A ! ----NASTRTHT--ST-- L +-----------------------------3l2c_A |
> 2jlg_B:STRUCTURAL EXPLANATION FOR THE ROLE OF MN IN THE ACTIVITY OF PHI6 RNA- DEPENDENT RNA POLYMERASE
QTRTKCVTRT----AT--QCRC--STTC--------YTKTLCQCTCECHC L +--------------------2jlg_B +-----1 ----------------------------YA-------------------- +-2 +--------------------6ar1_A ! ! ------------------------------KGLGKG-------------- L --3 +--------------------------6me0_C ! ----------LCIC--FA----YG-------------------------- +---------------------------7kqn_D |
> 2n8a_A:1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENTS AND SOLUTION STRUCTURE FOR PARP-1 F1F2 DOMAINS IN COMPLEX WITH A DNA SINGLE-STRAND BREAK
--RGSTFGVTPCRG--QCLCIG L +------------2n8a_A +--------1 ------------RGKG--LCIG +--2 +------------3odc_B ! ! --RG--FCVGPG---------- --3 +---------------------3od8_G ! STRG------------------ +------------------------4av1_A |
> 2o61_A:CRYSTAL STRUCTURE OF NFKB, IRF7, IRF3 BOUND TO THE INTERFERON-B ENHANCER
RGRGYTCTECRT---------------------- L +-----------------------------1gji_A ! --------------ECKT--RGAT--RGHT--RA L +-3 +---4mhg_A ! ! +-1 ----------------KT--RG----RGYT---- L ! +------------------------2 +---4bqa_A +-4 ! ----------------KT--RG----RGYA---- L ! ! +----4l18_B --5 ! ------------------NAST--RGHT--ST-- L ! +-----------------------------2uzk_A ! ------------ST----NAST--RTHT--ST-- L +-----------------------------3l2c_A |
> 2p6r_A:CRYSTAL STRUCTURE OF SUPERFAMILY 2 HELICASE HEL308 IN COMPLEX WITH UNWOUND DNA
RTQTLTMTETQTPT------------------ +-----------------------------5vhe_A +-2 ----RT-------------------------- L ! +-----------------------------6s3h_A --3 --------------LTTTRGETRCRCQC---- L ! +6ido_B +-----------------------------1 --------------YG------TGRGSGFTRG L +2h27_A |
> 2pi0_B:CRYSTAL STRUCTURE OF IRF-3 BOUND TO THE PRDIII-I REGULATORY ELEMENT OF THE HUMAN INTERFERON-B ENHANCER
ECKT----RGAT--RGHT----RA-- L +---4mhg_A +-1 --KT----RG----RGYT-------- L +------------------------2 +---4bqa_A ! ! --KT----RG----RGYA-------- L +-3 +----4l18_B ! ! ------NAST--RGHT--ST------ L +-4 +-----------------------------2uzk_A ! ! ----NAST----RTHT--ST------ L --5 +-----------------------------3l2c_A ! ----NAST----RGHT--STLT--KA L +-----------------------------2c6y_A |
> 2r5y_A:STRUCTURE OF SCR/EXD COMPLEX BOUND TO A CONSENSUS HOX-EXD SITE
--RT------------IAKGNA---- L +-----------------------------2hdd_A +-1 --RA------------NAMANARARG L +-2 +-----------------------------2d5v_B ! ! --RA----------KGSAQA------ L +-3 +-----------------------------6j5b_C ! ! --RG------------VA--NAQA-- L --4 +-----------------------------3l1p_A ! SA--RGSGVTSCSGNTRTRT------ L +-----------------------------6pax_A |
> 2xcr_U:THE 3.5A CRYSTAL STRUCTURE OF THE CATALYTIC CORE (B'A' REGION) OF STAPHYLOCOCCUS AUREUS DNA GYRASE COMPLEXED WITH GSK299423 AND DNA
> 3aaf_B:STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA
------KAFA----------------------------------YANAKTFGMC +-----------3aaf_B +------2 ------------LTNTHG--RT--YTPT----------------------RT-- L ! ! +----------6qil_A +-3 +-1 ------------------------NAST--RGHT----STLT------------ L ! ! +----------7cby_C +--4 ! QA---------------------------------------------------- ! ! +------------------7k63_U +-5 ! --RT--------LTNTHGTA----YTRG-------------------------- ! ! +--------------------2efw_A +-6 ! ------------------------NAST--RGHTNT--STLT------------ L ! ! +-----------------------7fj2_B +-7 ! ------------------------NAST--RTHT----ST-------------- ! ! +------------------------3co7_C +-8 ! --------------------QTNAST--RGHT----STLA-------------- L ! ! +------------------------2hdc_A +-9 ! ----------RC------------------------------------------ ! ! +-------------------------7cow_T +-10 ! ------------------TTHT----KG-------------------------- L ! ! +--------------------------7b0c_A +-11 ! --------------------------RC----YG--------KT---------- ! ! +---------------------------2acj_B +-12 ! ----------------PTPG--TTRG----------------------HT---- L ! ! +----------------------------5xxp_A -13 ! ----RC------------------------------------------------ ! +----------------------------6l9z_S ! --------------------------------YGRG------------------ +----------------------------4wcg_A |
> 3azk_F:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE CONTAINING H4K59Q MUTATION
LTRC +3kwq_E +--------------1 LGRA L +--------------2 +8he5_a ! ! --RT +-3 +--------------8siy_G ! ! --RG +-4 +-----------------------------7uv9_E ! ! LC-- --5 +-----------------------------8bvw_e ! --RT +-----------------------------8cww_A |
> 3bam_A:RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)
KA----------------NG------RGKT--YTTTDCRGVT----DGMT L +----3bam_A +---------------1 --------RT--------NG------RGRTYT--TTDCRG---------- L +--2 +----3odh_F ! ! ----------------SANTYA--FG--------STNTSAST-------- L +-3 +--------------------1dfm_A ! ! ------------------KGYT--------------SC------------ L +-4 +-----------------------2p0j_A ! ! ----------RC------------RT------------------------ L +-5 +-------------------------4dav_B ! ! --TG--KC------TC--QGLG--MC----------------DCKA---- L +-6 +---------------------------1wte_A ! ! ----AA------RAKG--RGECRG-------------------------- L --7 +----------------------------3bm3_A ! ----------------RG-------------------------------- +----------------------------5dff_A |
> 3g6t_A:GR GAMMA DNA-BINDING DOMAIN:FKBP5 16BP COMPLEX-34
--EC----RGRG--RT +8hbm_B +--------------1 ----KGVG----RG-- L +-----2 +5cbx_B ! ! --DAKG--RGRG---- L +-3 +--------------4iqr_B ! ! CAECKG--KGRG---- L --4 +--------------------6l6q_B ! CAECKG--KGRG---- L +----------------------7wnh_D |
> 3gpu_A:MUTM ENCOUNTERING AN INTRAHELICAL 8-OXOGUANINE (OXOG) LESION IN EC4- LOOP DELETION COMPLEX
--RGMG----RCFC--RG L +3u6p_A +-1 --RA------RGFT--RA +-2 +3gpu_A ! ! --RTMT----RCFA--RT +-----------3 +6fl1_A ! ! RT--MG----RCFC--RT L --6 +-6tc9_A ! --QALGYA--------RG ! +---------1k3x_A +---5 ----MG--ITRCFGHGRG L ! +------5itu_A +--4 ----MG--ITRCFG--RG +------6lwd_G |
> 3jso_B:CLASSIC PROTEIN WITH A NEW TWIST: CRYSTAL STRUCTURE OF A LEXA REPRESSOR DNA COMPLEX
------------------YGRG------ +-----------------------------4wcg_A +-1 QA------------------------NG +-2 +-----------------------------7k63_U ! ! --RC------------------------ +-3 +-----------------------------6l9z_S ! ! ----------------RCYG--KT---- +-4 +-----------------------------2acj_B ! ! ----------TTHT--KG------RC-- L +-5 +-----------------------------7b0c_A ! ! ----RC--------------------SG --6 +-----------------------------7cow_T ! ------SGRGPT--SGRG---------- L +-----------------------------7bhy_A |
> 3k9f_B:DETAILED STRUCTURAL INSIGHT INTO THE QUINOLONE-DNA CLEAVAGE COMPLEX OF TYPE IIA TOPOISOMERASES
> 3kjp_A:CRYSTAL STRUCTURE OF HPOT1V2-GGTTAGGGTTAG
KGFGST--TTDTTGTGLAFA----QGYGQGIA--------YT----------------------------YGDG--------ST--HT------------HT--YTRT L +-----3kjp_A +-----------------1 KGFGST--TTDTTGTGLAFT----QGYGQGIA--------YT----------------------------YGDG----------ST--HT----------HG--YTRT L +--2 +-----7qxs_P ! ! ----STTT--DT--QCHCFTKTTGRCYCQCLGKGDG------------------------------------------------------------------------ L +-3 +-----------------------7cuh_A ! ! ------------------------------------EGTGYG--SGDGKGATFTSGVGNGYTLGYG--KGYT--------------------------KT------RT L +-4 +--------------------------1s40_A ! ! ----------------------------------------KTNT----------------------WTRT----RTITYTET--------RTWTYTTT----NT---- L --5 +----------------------------6irq_A ! ------------------------------------------------------------------FTNT-------------------------------------- L +----------------------------6bhx_B |
> 3l2c_A:CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA
------------------NAST--RTHT----ST---------- +-----------------------------3co7_C +-1 ------------------NAST--RGHT----STLT-------- L +-2 +-----------------------------7cby_C ! ! ------------------NAST--RGHTNT--STLT-------- L +-3 +-----------------------------7fj2_B ! ! ----------------NAST--RGHTNT--STLA---------- L +-4 +-----------------------------2hdc_A ! ! ----RC-------------------------------------- +-5 +-----------------------------7cow_T ! ! ------------KGTA----TA------RG-------------- L +-6 +-----------------------------1xsd_A ! ! ------LTNTHG--RT--YTPT---------------------- L +-7 +-----------------------------6qil_A ! ! KAFA--------------------------------YANAFGMC --8 +-----------------------------3aaf_B ! --------------------NT--RGCT----NGST-------- L +-----------------------------1if1_B |
> 3q5f_A:CRYSTAL STRUCTURE OF THE SALMONELLA TRANSCRIPTIONAL REGULATOR SLYA IN COMPLEX WITH DNA
--ET--RGTCTGSTRG------------KT-- L +-----------------------------6q2b_B +-1 ------RGSTRTSTHG------------RA-- L +-2 +-----------------------------3zpl_B ! ! NT--KTPTQGSCNTKA--------------RT +-3 +-----------------------------5bmz_B ! ! --NGLTKTPTSTTT------RT------RT-- L +-4 +-----------------------------7el3_B ! ! ----TT--PTTCSTNT------------RT-- L +-5 +-----------------------------4lln_I ! ! ----STKGSTVASTNT--KTRC------RT-- L +-6 +-----------------------------7dvv_A ! ! ------RGTCTA--RGNT----------RT-- L +-7 +-----------------------------4fx4_B ! ! ----LTRTPTNAVT--------------RT-- L +-8 +-----------------------------6c2s_C ! ! ----TCLA--TCTTTT------------RT-- L +-9 +-----------------------------6jbx_A ! ! ----ST--PTTCSTQC----RA---------- L +-10 +-----------------------------1ddn_B ! ! ----STQTPTPGTTRG--------------HT L +-11 +-----------------------------5xxp_A ! ! --------KGTA--TA----RG---------- L +-12 +-----------------------------1xsd_A ! ! --------------RC--YG----KT------ +-13 +-----------------------------2acj_B ! ! ------------------YGRG---------- +-14 +-----------------------------4wcg_A ! ! ----SGRGPT--SGRG---------------- L +-15 +-----------------------------7bhy_A ! ! --------------------------KG---- +-16 +-----------------------------7o4j_W ! ! --------TTHT--KG------RC-------- L -17 +-----------------------------7b0c_A ! ----HT--STATSTRG---------------- L +-----------------------------5lej_A |
> 3rax_B:DPO4 EXTENSION TERNARY COMPLEX WITH 3'-TERMINAL PRIMER T BASE OPPOSITE THE 1-METHYLGUANINE (M1G) LESION
------FT------------PT----------ST----------LT--IT------RG--RA +2agp_B +--------------1 ----VC------AC------------------------------LG----SC--------RA +----2 +4fbt_A ! ! ----VTFT----AT------PC----------ST----------LA--------RART--RG +-3 +--------------1jx4_A ! ! ----VT------AT------PC----------------------LA----------RT--RA +-4 +-------------------4ruc_A ! ! FCYC----------TTAT----SCICDCEC--ST----------------SG----RC--RT +-5 +---------------------4tqr_A ! ! ----QT--WA------RTST--------------ST--PATA----LT----RG--MTFT-- +---6 +-----------------------3jaa_A ! ! ----------ST--------WG--------------DTWC--MG------------------ --7 +------------------------6x6z_A ! ------------------------------KT------------------------------ +----------------------------7c97_K |
> 3twm_A:CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA FPG
----MG----RGFG--RG +--3twm_A +------------1 RT--MG----RCFC--RT L ! +--6tc9_A +-5 --QALGYA--------RG ! ! +---------1k3x_A ! +-----4 ----MG--ITRCFGHGRG L ! ! +-----5itu_A --6 +---3 ----MG--ITRCFG--RG ! +-----6lwd_G ! --RTMT----RCFA--RT ! +-----6fl1_A +----------2 ----LG--MTRCFC--RT L +-----3vk8_B |
> 3u61_B:STRUCTURE OF T4 BACTERIOPHAGE CLAMP LOADER BOUND TO CLOSED CLAMP, DNA AND ATP ANALOG AND ADP
> 3u6p_A:MUTM SET 1 GPG
--RGMG----RCFC--RG L +3u6p_A +-1 --RA------RGFT--RA +-2 +3gpu_A ! ! --RTMT----RCFA--RT +-----------3 +6fl1_A ! ! RT--MG----RCFC--RT L --6 +-6tc9_A ! --QALGYA--------RG ! +---------1k3x_A +---5 ----MG--ITRCFGHGRG L ! +------5itu_A +--4 ----MG--ITRCFG--RG +------6lwd_G |
> 3vk8_B:CRYSTAL STRUCTURE OF DNA-GLYCOSYLASE BOUND TO DNA CONTAINING THYMINE GLYCOL
--LGMTRCFCSAKANGRT L +-------3vk8_B +------3 RTMT--RCFA------RT ! ! +---6fl1_A ! +---1 --MG--RCFC------RT L --4 +---6tc9_A ! --MGITRCFG-------- L ! +-----5itu_A +-------2 --MGITRCFG-------- +-----6lwd_G |
> 3wkj_D:THE NUCLEOSOME CONTAINING HUMAN TSH2B
RG---- +7k6p_D +--------------------------2 RG---- ! +3x1t_H +-9 --LTRC ! ! +-------------------6jm9_A ! ! ! ----RT ! +------8 +8cww_A ! ! +--------------1 ----RT ! +----5 +8g57_E ! ! ----RG +-10 +--------------7yqk_E ! ! ----RT ! ! +--1u35_G ! ! +-------------3 ----RG ! ! +-6 +--7uv9_E ! ! ! ! --LC-- +-11 +----------7 +----------------8bvw_e ! ! ! ----RT ! ! ! +----7lyb_G ! ! +-----------4 --LTRC +-12 ! +----3kwq_E ! ! ! ----RA ! ! +-----------------------------1kx5_G -13 ! ----RT ! +-----------------------------7zs9_e ! --LCRT +-----------------------------8byq_e |
> 3zpl_B:CRYSTAL STRUCTURE OF SCO3205, A MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM STREPTOMYCES COELICOLOR, IN COMPLEX WITH DNA
----DCLT--AGTTRG----RG------RA L +-----------------5h3r_A +-------1 ----ST----TC--QG----RG-------- +---2 +-----------------7b24_C ! ! ST--STQAQGSTSART----------KT-- L +-3 +-------------------------5trd_B ! ! ------------NASTRGHT--STLT--KA L +-4 +-----------------------------2c6y_A ! ! ------------NASTRTHT--ST------ L +-5 +-----------------------------3l2c_A ! ! ------------NASTRGHT--ST------ L +-6 +-----------------------------2uzk_A ! ! LTETTTRAECRCRCQC-------------- L --7 +-----------------------------3n97_A ! ----ITRGECSCSGKG-------------- L +-----------------------------5i2d_R |
> 4aso_F:TUBR BOUND TO 24 BP OF TUBC FROM BACILLUS THURINGIENSIS SEROVAR ISRAELENSIS PBTOXIS
------STSTQAQGSTSART----------KT-- L +-------------------------5trd_B +---2 --------DCLT--AGTTRG----RG------RA L ! ! +-----------------5h3r_A +-3 +-------1 --------ST----TC--QG----RG-------- ! ! +-----------------7b24_C +-4 ! ----------------NASTRGHT--STLT--KA L ! ! +-----------------------------2c6y_A --5 ! --------ITRGECSCSGKG-------------- L ! +-----------------------------5i2d_R ! HAKARA---------------------------- +-----------------------------6dta_A |
> 4bqa_A:CRYSTAL STRUCTURE OF THE ETS DOMAIN OF HUMAN ETS2 IN COMPLEX WITH DNA
------KT--RG--RGYT-- L +------4bqa_A +--1 ------KT--RG--RGYA-- L +---------------2 +------4l18_B ! ! ----ECKT--RGATRGHTRA L --3 +---------4mhg_A ! ITRGECSCSGKG-------- L +-------------------------5i2d_R |
> 4fbu_B:DPO4 POLYMERASE PRE-INSERTION BINARY COMPLEX WITH THE N- (DEOXYGUANOSIN-8-YL)-1-AMINOPYRENE LESION
----VT------AT------PC----------------------LA----------RT--RA +-----------------------------4ruc_A ! ------FT------------PT----------ST----------LT--IT------RG--RA ! +2agp_B ! +--------------1 ----VC------AC------------------------------LG----SC--------RA ! +----2 +4fbt_A ! ! ! ----VTFT----AT------PC----------ST----------LA--------RART--RG --7 +--3 +--------------1jx4_A ! ! ! FCYC----------TTAT----SCICDCEC--ST----------------SG----RC--RT ! +-4 +-------------------4tqr_A ! ! ! ----QT--WA------RTST--------------ST----TA----LT----RG--MTFT-- ! +---5 +----------------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG------------------ +-6 +------------------------6x6z_A ! ------------------------------KT------------------------------ +----------------------------7c97_K |
> 4g3i_B:CRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH DNA DUPLEX
----VT------AT------PC----------------------LA------RT--RA +-----------------------------4ruc_A ! ------FT------------PT----------ST----------LTIT----RG--RA ! +2agp_B ! +--------------1 ----VTFT----AT------PC----------ST----------LA----RART--RG ! +----2 +1jx4_A ! ! ! ----VC------AC------------------------------LG--SC------RA --7 +--3 +--------------4fbt_A ! ! ! FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT ! +-4 +-------------------4tqr_A ! ! ! ----QT--WA------RTST--------------ST----TA--LT--RG--MTFT-- ! +---5 +----------------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG-------------- +-6 +------------------------6x6z_A ! ------------------------------KT-------------------------- +----------------------------7c97_K |
> 4g92_C:CCAAT-BINDING COMPLEX FROM ASPERGILLUS NIDULANS WITH DNA
RG---- +-----------------------------3x1t_H ! ----RT ! +---1u35_G ! +------------2 --LTRC ! +-5 +---3kwq_E +-8 ! ! --LC-- ! ! +-------6 +----------------8bvw_e ! ! ! ! ----RT ! ! ! ! +----7lyb_G ! ! ! +-----------3 ----RT ! +----7 +----8cww_A +-9 ! --LTRC ! ! ! +--------------6jm9_A ! ! +---------4 ----RG ! ! ! +7uv9_E +-10 ! +--------------1 ----RT ! ! ! +8g57_E ! ! ! ----RA +-11 ! +-----------------------------1kx5_G ! ! ! ----RG ! ! +-----------------------------7yqk_E -12 ! --LCRT ! +-----------------------------8byq_e ! ----RT +-----------------------------7zs9_e |
> 4gnx_Z:STRUCTURE OF U. MAYDIS REPLICATION PROTEIN A BOUND TO SSDNA
--------RTWTLT--------FTNT--------RT--KTFT--------------VTKT----TTWTKT--FT----ST--FTSTATMTETDTYTVTYTKTNTYTNTRTITSTNTWT--FTET------DTFTRTRT L +---------------4gnx_Z +---------1 ----------------------------------------------------------------------------------------------------KT----NTRTIT----WTTTFT--MTRTRTDTYTRTRT L +-2 +---------------6i52_C ! ! --RTTTKT------TTATFTNT-------------------------------------------------------------------------------------------------------------------- L +-3 +-------------------------6bhx_B ! ! KTNT------------TTWTRT----RTITYTET--RTWT--TTNTNTMTQTLT------------------------------------------------------------------------------------ L +-4 +---------------------------6irq_A ! ! ------------------------------------------------------TTDT--QCHCFTKTTGRC--QC--LG--KGDG---------------------------------------------------- L --5 +----------------------------7cuh_A ! ----------------------------------------------------------------------KTFT--NT--QT-------------------------------------------------------- L +----------------------------6i52_B |
> 4h0e_A:CRYSTAL STRUCTURE OF MUTANT ORR3 IN COMPLEX WITH NTD OF ARAR
------TTHT--KG----RC L +-----------------------------7b0c_A +-1 ------------RGYG---- +-2 +-----------------------------1qbj_C ! ! QTSTRTETTA--RA------ L +-3 +-----------------------------3iyd_H ! ! --STRGECTANGKG------ L --4 +-----------------------------3mzh_A ! --ST--PTTCSTQC--RC-- L +-----------------------------2isz_B |
> 4hly_B:THE COMPLEX CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF VIRF-1 FROM THE ONCOGENIC KSHV WITH DNA
ECKT--RGAT--RGHT----RA-- L +---4mhg_A +-------------------------2 --KT--RG----RGYA-------- L ! ! +-4l18_B --3 +-1 --KT--RG----RGYT-------- L ! +-4bqa_A ! ----NAST--RGHT--STLT--KA L +-----------------------------2c6y_A |
> 4hn5_B:GR DNA BINDING DOMAIN - TSLP NGRE COMPLEX
----KGVG--RG-- L +-----------------------------5cbx_B ! --EC----RGRGRT ! +8hbm_B --4 +--------------1 --DAKG--RGRG-- L ! +---2 +4iqr_B ! ! ! CAECKG--KGRG-- L +---------3 +---------------6l6q_B ! CAECKG--KGRG-- L +-------------------7wnh_D |
> 4hqe_A:THE CRYSTAL STRUCTURE OF QSRR-DNA COMPLEX
----FG--TTPTRTAT--LT------------------ L +----4hqe_A +------------1 --------TT--PTTCSTNT------------RT---- L +---3 +----4lln_I ! ! ------NGLTKTPTSTTT------RT------RT---- L +-5 +-----------------7el3_B ! ! ------ET--RGTCTGSTRG------------KT---- L +-6 +---------------------6q2b_B ! ! --------DCSA--TATT------RT------RA---- L +-9 +-----------------------1z9c_A ! ! --------STQTPTPGTTRG--------------HT-- L ! +-------------------------5xxp_A ! ------LTNTHG--RTYTPT------------RT---- L ! +----------6qil_A +-10 +---------2 ----------------NASTRGHT--STLT-------- L ! ! +--4 +----------7cby_C ! ! ! ! ------LTNTHGTA--YTRG------------------ ! ! +-7 +--------------------2efw_A +-11 ! ! ! QA----------------------------------NG ! ! +-8 +-----------------------7k63_U ! ! ! --------ST--PTTCSTQC----RA------------ L +-12 ! +-------------------------1ddn_B ! ! ! ----------------NASTRGHTNTSTLT-------- L ! ! +--------------------------7fj2_B +-13 ! ------------------RC--YG------KT------ ! ! +---------------------------2acj_B +-14 ! ------------KGTA--TA----RG------------ L ! ! +----------------------------1xsd_A +-15 ! --------HT--STATSTRG------------------ L ! ! +----------------------------5lej_A -16 ! --RC---------------------------------- ! +----------------------------6l9z_S ! --------SGRGPT--SGRG------------------ L +----------------------------7bhy_A |
> 4i3h_A:A THREE-GATE STRUCTURE OF TOPOISOMERASE IV FROM STREPTOCOCCUS PNEUMONIAE
> 4iri_A:AUTO-INHIBITED ERG ETS DOMAIN-DNA COMPLEX
--ECKTRGATRGHTRA L +---4mhg_A +-1 ----KTRG--RGYT-- L +------------------------2 +---4bqa_A ! ! ----KTRG--RGYA-- L --3 +----4l18_B ! ST--TCQG----RG-- +-----------------------------7b24_C |
> 4lup_A:CRYSTAL STRUCTURE OF THE COMPLEX FORMED BY REGION OF E. COLI SIGMAE BOUND TO ITS -10 ELEMENT NON TEMPLATE STRAND
--------SC------PTSC--KTATSCFCRC--DC------TAWTYARTIT--NT--KCNC--VTRA-- L +-----------------------------6jbq_F +-1 IA--LAKARAFT--YTTT--WT------FA--KAYA----HA--YATAQAAT--NT--VA--IT----VT L +-2 +-----------------------------7d7c_F ! ! --DGQG----LGMART--PG--KT----FTRT----TTNTKGAGWTYGRTITTGNTYAICNCYA--RG-- --3 +-----------------------------5zx2_F ! --DG------LG------PG--KT----FTRT----TTNT--AGWTYGRTITTGNT-------------- +-----------------------------6jcy_F |
> 4rul_A:CRYSTAL STRUCTURE OF FULL-LENGTH E.COLI TOPOISOMERASE I IN COMPLEX WITH SSDNA
------------------------------------------------RGAGTGFGYGKGTGNGRTFTYTTTRAAGFGAAFAPTRATGRCYTSTST L +----------4rul_A +--------1 ------HCDC--KT--RCRC--RCYTSTPT--WT--PTKTQTRTSTTG------------------------------------------------ L +----2 +----------6cqi_A ! ! ----RTHCDGRT----RCRC--RCYTSTPT--WTKAPAKT--RTSTTG------------------------------------------------ --3 +-------------------6pcm_B ! ECKC----------DC----DCWCIG--RGRC------VC--RC--TT------------------------------------------------ L +------------------------2o5c_B |
> 4uqm_A:CRYSTAL STRUCTURE DETERMINATION OF URACIL-DNA N-GLYCOSYLASE (UNG) FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH DNA - NEW INSIGHTS INTO THE ROLE OF THE LEUCINE-LOOP FOR DAMAGE RECOGNITION AND REPAIR
--------PALA-- +4uqm_A +--1 --------PTLA-- +--------------------2 +1emh_A ! ! KT----TTRA---- +--3 +---4yig_E ! ! ----RA--RCQTNT --4 +------------------------2dp6_A ! VGRG----PG---- +---------------------------1oe4_B |
> 4wwc_B:CRYSTAL STRUCTURE OF FULL LENGTH YVOA IN COMPLEX WITH PALINDROMIC OPERATOR DNA
EGRGSARGMCTTRT---------- L +------------------4wwc_B +-----1 ETNTSCRGHC--RT--------QA +-2 +------------------5d4s_B ! ! --------------RCYG--KT-- +-3 +------------------------2acj_B ! ! ----------------YGRG---- +-4 +--------------------------4wcg_A ! ! --------TTHT--KG------RC L --5 +---------------------------7b0c_A ! RA--ST--ECTTRAKA------HT +---------------------------7oz3_B |
> 4x23_D:CRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE
RC +---6qld_f +-------2 RA ! ! +7xsx_a --3 +---1 RA L ! +8he5_a ! RT +-----------8siy_G |
> 4z47_A:STRUCTURE OF THE ENZYME-PRODUCT COMPLEX RESULTING FROM TDG ACTION ON A GU MISMATCH IN THE PRESENCE OF EXCESS BASE
KT----AARGCGACQTPG---- +-------4z47_A +-------------1 --RA------RCQTNTQGTC-- +--2 +-------2dp6_A ! ! ----TT--RA------------ --3 +---------------------4yig_E ! ------PG------------NG +------------------------1oe4_B |
> 4z4q_B:QUINAZOLINEDIONE(PD 0305970)-DNA CLEAVAGE COMPLEX OF TOPOISOMERASE IV FROM S. PNEUMONIAE
> 5ay8_E:CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
HTRGYG----RT +-----------------------------8siy_G +-1 --RG----LC-- +-2 +-----------------------------8bvw_e ! ! --RT----LGRA L +-3 +-----------------------------8he5_a ! ! HARA----LTRC +-4 +-----------------------------3kwq_E ! ! --RG------RT +-5 +-----------------------------8cww_A ! ! --RT------RG --6 +-----------------------------7uv9_E ! ------RG---- +-----------------------------7k6p_D |
> 5b40_A:THE NUCLEOSOME STRUCTURE CONTAINING H2B-K120 AND H4-K31 MONOUBIQUITINATIONS
--LC---- +5mlu_A +-1 ------RT +----2 +8g57_E ! ! RG------ +----5 +6pww_K ! ! --LT--RC ! ! +5xm1_A ! +----3 ------RA +-----------7 +7ea8_A ! ! RC------ ! ! +-------6fq8_A ! +--6 ------RA +--8 ! +--7xsx_a ! ! +----4 ------RC ! ! +--6qld_f --9 ! --LT---- ! +----------------------4z5t_A ! ----KT-- L +-------------------------7cvo_A |
> 5cqq_A:CRYSTAL STRUCTURE OF THE DROSOPHILA ZESTE DNA BINDING DOMAIN IN COMPLEX WITH DNA
RA----------YAQTNAAARG L +-----------------------------6wig_A +-1 ------RGKGSGSAQAVC---- L +-2 +-----------------------------5no6_N ! ! --RC------------------ +-3 +-----------------------------6l9z_S ! ! RT--------FTYAQTNAATRG L --4 +-----------------------------6ryd_F ! ----NT---------------- +-----------------------------7tve_F |
> 5d5v_B:CRYSTAL STRUCTURE OF HUMAN HSF1 WITH SATELLITE III REPEAT DNA
----ECKTRGHTRA L +---4mhg_A +-1 ------KTRGYT-- L +-------------------2 +---4bqa_A ! ! ------KTRGYA-- L --3 +-----4l18_B ! ITSCSGKG------ L +-------------------------5i2d_R |
> 5gtc_H:CRYSTAL STRUCTURE OF COMPLEX BETWEEN DMAP-SH CONJUGATED WITH A KAPOSI'S SARCOMA HERPESVIRUS LANA PEPTIDE (5-15) AND NUCLEOSOME CORE PARTICLE
----RC +--6qld_f +-----4 LT--RC ! ! +3kwq_E ! +--2 LG--RA L ! +8he5_a +--5 ----RA ! ! +7xsx_a ! ! +-1 --LT-- +-----6 +-------3 +7ywx_E ! ! ! ----RT ! ! +8cww_A +-7 ! ----RT ! ! +-----------8siy_G +-8 ! LC---- ! ! +-----------------8bvw_e --9 ! LA--RG ! +-------------------7unc_a ! ----RG +--------------------7uv9_E |
> 5itu_A:CRYSTAL STRUCTURE OF HUMAN NEIL1(242K) BOUND TO DUPLEX DNA CONTAINING THF
----MG--ITRCFGHGRG L +------5itu_A +------------2 ----MG--ITRCFG--RG ! +------6lwd_G --4 ----MG----RGFG--RG ! +---3twm_A ! +------------1 RT--MG----RCFC--RT L +--3 +---6tc9_A ! --QALGYA--------RG +----------------1k3x_A |
> 5k5q_D:STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDNG PROTEIN- CENTROMERE COMPLEX
----ET--RGTCTG--STRG------------------KT---- L +-----------------------------6q2b_B +-12 ------STKGSTVA--STNT----KTRC----------RT---- L +-13 +-----------------------------7dvv_A ! ! --NT--KTPTQGSC--NTKA--------------------RT-- +-14 +-----------------------------5bmz_B ! ! ------TT--PTTC--STNT------------------RT---- L +-15 +-----------------------------4lln_I ! ! ----NGLTKTPTST--TT--------RT----------RT---- L ! +-----------------------------7el3_B ! ------NTHG--RT--YTPT------------------RT---- L ! +----------6qil_A ! +---------1 ------------------NAST--HT----STLT---------- L ! +--3 +----------7cby_C ! ! ! RT--LTNTHGTA----YTRG----------------KG--QA-- ! +-4 +--------------------2efw_A ! ! ! ------------------------------------------NG ! +-5 +-----------------------7k63_U +-16 ! ! ------------QTNAST--RGHTNT--STLA------------ L ! ! +-6 +-------------------------2hdc_A ! ! ! ! ------ST--PTTC--STQC------RA---------------- L ! ! +-7 +--------------------------1ddn_B ! ! ! ! --RC--------------------------------------SG ! ! +-8 +--------------------------7cow_T ! ! ! ! ----------------NAST--RTHT----ST------------ ! ! +-9 +---------------------------3co7_C +-17 ! ! ! --RA--ST--ECTT--RAKA------------------------ ! ! ! +-10 +---------------------------7oz3_B ! ! ! ! ! --ETNTSCRGHC----RT-------------------------- ! ! +-11 +----------------------------5d4s_B ! ! ! ----------KGTA----TA------RG---------------- L +-18 ! ! +---------------1xsd_A ! ! ! +------------2 ----------------NAST--RGHTNT--STLT---------- L ! ! ! +---------------7fj2_B ! ! ! ------STQTPTPG--TTRG----------------HT------ L +-19 ! +-----------------------------5xxp_A ! ! ! ------------------RC----YG--------KT-------- ! ! +-----------------------------2acj_B -20 ! ------------------------YGRG---------------- ! +-----------------------------4wcg_A ! ------HT--STAT--STRG------------------------ L +-----------------------------5lej_A |
> 5kbj_B:STRUCTURE OF REP-DNA COMPLEX
------------RGYG-- +-----------------------------1qbj_C +-1 QTSTRTETTA--RA---- L +-2 +-----------------------------3iyd_H ! ! --TT--SGLTYA------ L --3 +-----------------------------2nra_C ! ------TTHT--KG--RC L +-----------------------------7b0c_A |
> 5mlu_A:CRYSTAL STRUCTURE OF THE PFV GAG CBS BOUND TO A MONONUCLEOSOME
RGYA--LC---- +5mlu_A +---------2 RT--RG------ ! +6pww_K +-6 RA----LT--RC ! ! +5xm1_A ! ! +-1 RG--------RT +-7 +---------3 +8g57_E ! ! ! RA----LT---- ! ! +4z5t_A ! ! RT--------RA +---8 +-----------7ea8_A ! ! RG--RC------ ! ! +-------6fq8_A ! +-----5 ----------RA +-------9 ! +--7xsx_a ! ! +----4 ----------RC ! ! +--6qld_f -10 ! RG---------- ! +-----------------6y5d_Q ! --------KT-- L +-------------------------7cvo_A |
> 5n9g_C:TFIIIB -TBP/BRF2/DNA AND SANT DOMAIN OF BDP1-
RAYC-------------- +-----------------------------6f40_W +-1 ----RTSTVCKGDCRG-- L +-2 +-----------------------------1w0t_A ! ! ----RTRCET--SAQAKT L --3 +-----------------------------6qec_A ! --------------YGRG +-----------------------------4wcg_A |
> 5nnu_A:KSHV URACIL-DNA GLYCOSYLASE, PRODUCT COMPLEX WITH DSDNA EXHIBITING DUPLEX NUCLEOTIDE FLIPPING
----PTLTLTRT +--5nnu_A +-2 ----PALA---- ! ! +4uqm_A --3 +-1 ----PTLA---- ! +1emh_A ! KTTT-------- +----4yig_E |
> 5npk_d:1.98A STRUCTURE OF THIOPHENE1 WITH S.AUREUS DNA GYRASE AND DNA
> 5o9g_E:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
RGYA--LC---- +5mlu_A ! RA----LT--RC +-------3 +5xm1_A ! ! +-1 RG--------RT ! +-2 +8g57_E +---6 ! RT--RG------ ! ! +6pww_K +-7 ! RA----LT---- ! ! +-------4z5t_A ! ! RT--------RA +---8 +-----------7ea8_A ! ! RG--RC------ ! ! +-------6fq8_A ! +-----5 ----------RA +-------9 ! +--7xsx_a ! ! +----4 ----------RC ! ! +--6qld_f -10 ! RG---------- ! +-----------------6y5d_Q ! --------KT-- L +-------------------------7cvo_A |
> 5o9g_F:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
----RC +---6qld_f +--------------------4 ----RA ! +---7xsx_a ! LC---- +-6 +5mlu_A ! ! +--------------2 LT---- ! ! ! +4z5t_A ! +---------5 LT--RC ! ! +5xm1_A --7 ! +-1 ----RT ! +--------------3 +8g57_E ! ! ----RA ! +7ea8_A ! --KT-- L +--------------------------7cvo_A |
> 5o9g_G:STRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
RG---- +-----------------------------7k6p_D +-2 ----RG +-3 +-----------------------------7uv9_E ! ! ----RT +-4 +-----------------------------8siy_G ! ! --LC-- +-5 +-----------------------------8bvw_e ! ! --LTRC ! ! +3kwq_E --6 +-----------------------------1 --LGRA L ! +8he5_a ! ----RT +-----------------------------8cww_A |
> 5ui5_I:CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS SIGMAN BOUND TO PROMOTER DNA
--------------------RAETSCSTRT--RGRGTT--RT L +-----------------------5ui5_I +--1 ------------------------------DTRGRCTTKTRT L +-2 +-----------------------2o9l_A ! ! --------------YGRG------------------------ +-3 +--------------------------4wcg_A ! ! ------------RCYG--KT---------------------- --4 +----------------------------2acj_B ! ETNTSCRGHCRT------------------------------ +----------------------------5d4s_B |
> 5vfx_A:STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
ITRGECSCSG-------- L +--------------------------5i2d_R ! ------KT--RGYA---- L +--3 +-4l18_B ! ! +---1 ------KT--RGYT---- L ! +--------------------2 +-4bqa_A --4 ! ----ECKT--RGHT---- L ! +-----4mhg_A ! ----NASTRGHT--STLT L +-----------------------------2c6y_A |
> 5w0u_B:CRYSTAL STRUCTURE OF MBP FUSED ACTIVATION-INDUCED CYTIDINE DEAMINASE (AID) IN COMPLEX WITH DCMP
--RGWA---------------------------------------- +--------5w0u_B +--------------1 RT-------------------------------------------- L +-2 +--------5zd4_C ! ! ----------------------------------YTPTKTKTYTLT +--3 +-----------------------5w2m_D ! ! ------RAHGTCHCACICWT----YCDT--YT--YGPG--DG--QA +-4 +-------------------------5sww_C ! ! ------------------------NC--KC---------------- --5 +----------------------------6vpc_F ! --------------------LGSC--TG--YGYG------------ +----------------------------2pfj_A |
> 5wcu_N:CRYSTAL STRUCTURE OF 167 BP NUCLEOSOME BOUND TO THE GLOBULAR DOMAIN OF LINKER HISTONE H5
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RC ! ! +---6qld_f ! +-------------------------4 ------RA ! +---7xsx_a ! --LC---- ! +5mlu_A --9 +-2 ------RT ! ! +8g57_E ! +-------3 --LT--RC ! ! ! +5xm1_A ! +-------------5 +-1 --LT---- ! ! ! +4z5t_A +-------6 ! ------RA ! +-------7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 5xfp_B:BINARY COMPLEX OF PHF1 AND A DOUBLE STRANDED DNA
----NASTRTHT--ST---- L +-----------------------------3l2c_A +-1 ----NASTRGHT--ST---- L +-2 +-----------------------------2uzk_A ! ! ----NASTRGHT--STLT-- L --3 +-----------------------------2c6y_A ! ECKTRGAT--RGHT----RA L +-----------------------------4mhg_A |
> 5xfr_B:TERNARY COMPLEX OF MTF2, DNA AND HISTONE
----NASTRGHT--ST-- L +-----------------------------2uzk_A +-2 ECKTRGAT--RGHT---- L ! ! +---4mhg_A +-3 +-------------------------1 --KTRG----RGYA---- L ! ! +---4l18_B --4 ! ----NASTRTHT--ST-- L ! +-----------------------------3l2c_A ! ----NASTRGHT--STLT L +-----------------------------2c6y_A |
> 5xm1_A:THE MOUSE NUCLEOSOME STRUCTURE CONTAINING H2A, H2B TYPE3-A, H3MM7, AND H4
HTRA----LT--RC +5xm1_A +-------------1 --RT--RG------ ! +6pww_K ! HTRG--------RT ! +8g57_E +-----------8 +-------2 --RT--------RA ! ! ! +7ea8_A ! ! +----6 ------------RA ! ! ! ! +--7xsx_a ! ! ! +----5 ------------RC ! +-7 +--6qld_f +-9 ! --RGYA--LC---- ! ! ! +5mlu_A ! ! +-----------4 --RG--RC------ ! ! ! +6fq8_A -10 ! +-3 --RG---------- ! ! +6y5d_Q ! ! ----------KT-- L ! +-------------------------7cvo_A ! --RA----LT---- +--------------------------4z5t_A |
> 5xxp_A:CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
--ST----TC----QG------RG------ +-----------------------------7b24_C +-1 --DCLT--AG--TTRG------RG------ L +-2 +-----------------------------5h3r_A ! ! --------------NASTRGHT--STLT-- L --3 +-----------------------------2c6y_A ! STSTQAQG--ST--SART----------KT L +-----------------------------5trd_B |
> 5z3u_A:STRUCTURE OF SNF2-NUCLEOSOME COMPLEX AT SHL2 IN ADP BEFX STATE
HTRG----RT +-----------------------8g57_E ! --RG----RG ! +---------------------7yqk_E ! ! --RGYALCRT ! ! +------------------8byq_e +-11 ! ! --RA--LTRC ! ! +-8 +-5 +------6jm9_A ! ! ! ! ! ! +-------2 --------RA ! ! ! ! ! ! ! ! +--7xsx_a ! ! ! ! ! +---4 +---1 --------RC ! ! ! +-7 ! +--6qld_f +-12 +-10 ! ! --RT----RG ! ! ! ! +--------------7uv9_E ! ! ! ! ------LT-- ! ! ! +--------------------7ywx_E ! ! ! --RG----RT ! ! +-----------------------8cww_A ! ! HARA--LTRC +-13 +--------------------------3kwq_E ! ! --RG--LC-- ! ! +---------8bvw_e ! ! +---------3 --------RT ! ! +--6 +---------7lyb_G +-14 ! ! ! --RT--LARG ! ! +----9 +-------------------7unc_a ! ! ! --RG------ -15 ! +----------------------6a5l_e ! ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 5z7d_C:P204HINAB-DSDNA COMPLEX STRUCTURE
--RT----------------RCNCQC +-------------5z7d_C +-------1 --RA---------------------- +--2 +-------------3rnu_B ! ! NCKG---------------------- L +---3 +---------------------4jbm_A ! ! ------------RT------------ --4 +------------------------4l5r_C ! ----DTTGTGLAQGYGQGIA------ L +----------------------------7qxs_P |
> 6a5l_e:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
RA------LT------RG +8eue_E +-------2 RTYT----------RG-- ! +7k6p_A +-----4 RA------LT----RC-- ! ! +5xm1_A ! +-------1 RT--RG------------ +-------7 +6pww_K ! ! RGYA----------RT-- ! ! +-----7wlr_E ! +-------3 --------------RA-- +-8 +-----7xsx_a ! ! ------RAAA--NA---- ! ! +--------1jfi_B ! ! +--5 ----------IT------ +-9 +---------6 +--------6r8y_H ! ! ! --------------RT-- ! ! +-----------7lyb_G +-10 ! --------------RG-- ! ! +----------------------5t5k_E -11 ! --------------RA-- ! +-----------------------6t7a_C ! --------------RG-- +------------------------7e9c_G |
> 6a5l_g:RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
----RC +---6qld_f +-------------------------3 ----RA +-6 +---7xsx_a ! ! --KT-- L ! +-----------------------------7cvo_A ! LC---- --7 +5mlu_A ! +--------------2 LT---- ! ! +4z5t_A +--------------5 ----RA ! +7ea8_A ! +--------------1 ----RT +-4 +8g57_E ! LT--RC +--------------5xm1_A |
> 6bwy_A:DNA SUBSTRATE SELECTION BY APOBEC3G
NG--------STTTDT----------QC--HCFA----------TGRGYCRCQCLGSGKGDG---------------------------------------------- +-------------6bwy_A +-------2 ------------------------------------------------------------------------------------------------YTPTKTKTYTLT +---3 +-------------5w2m_D ! ! --------------------------------------------------------------------RAHGTCHCACICWT------YCDTYT--YGPG--DG--QA ! +---------------------5sww_C +-6 ----------STTTDT----------QC--HCFAKT--------TGRAYC--QCLG--KGDGQG-------------------------------------------- L ! ! +1qzh_E ! ! +------------------------1 ----------STTTDT----------QC--HCFTKT--------TGRCYC--QCLG--KGDG---------------------------------------------- L ! +-5 +7cuh_A ! ! --KTNT----------TTAT----WT--RT------RTITYTET---------------------------------------------------------------- L +-8 +------------------------6irq_A ! ! ----------------------------------------------------------------RGWA---------------------------------------- ! ! +------------------------5w0u_B ! ! +--4 --------------------------------------------------------------------------------------NCKC------------------ --9 +-7 +------------------------6vpc_F ! ! ----------------------------------------------------------------------------------LGSC----TG--YG------------ ! +---------------------------2pfj_A ! ----RTTTKT------TT--ATNTFT--NT------------------------------------------------------------------------------ L +----------------------------6bhx_B |
> 6c0w_H:CRYO-EM STRUCTURE OF HUMAN KINETOCHORE PROTEIN CENP-N WITH THE CENTROMERIC NUCLEOSOME CONTAINING CENP-A
--RC +---6qld_f ! --RA +---4 +7xsx_a ! ! +-1 LT-- ! ! ! +7ywx_E ! +--3 LTRC +-------5 ! +3kwq_E ! ! +-2 LGRA L ! ! +8he5_a +-6 ! --RT ! ! +-------8siy_G +-7 ! LC-- ! ! +---------------8bvw_e +-8 ! LARG ! ! +-----------------7unc_a --9 ! --RT ! +-------------------8cww_A ! --RG +--------------------7uv9_E |
> 6c1t_D:MBD2 IN COMPLEX WITH A PARTIALLY METHYLATED DNA
RG------YCKARG +-----------------------------6cnp_A +-1 RG----------RG +-2 +-----------------------------6ccg_B ! ! RGTTRT--YA--RG +-3 +-----------------------------6d1t_A ! ! RG------YC--RG --4 +-----------------------------6c1y_A ! RG----DTYG--RT +-----------------------------6ogk_A |
> 6fl1_A:CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE LACTOCOCCUS LACTIS FPG MUTANT T221P AND A FAPY-DG CONTAINING DNA
--RTMT--RCFA------RT +---6fl1_A ! --RGMG--RCFC------RG L +-------------3 +3u6p_A ! ! +-1 --RA----RGFT------RA ! +-2 +3gpu_A ! ! RT--MG--RCFC------RT L +----------7 +-6tc9_A ! ! ----MG--RGFG------RG ! ! +----3twm_A ! ! +------4 ----LGMTRCFC--KANGRT L ! ! ! +----3vk8_B --8 +-----6 ----MGITRCFG----HGRG L ! ! +------5itu_A ! +----5 ----MGITRCFG------RG ! +------6lwd_G ! ------------RT------ +----------------------------6bek_D |
> 6fq8_A:CLASS 3 : TRANSLOCATED NUCLEOSOME
--RA----LT-- +-----------------------------4z5t_A ! --RT------RA ! +7ea8_A ! +-------1 HTRG------RT ! ! +8g57_E ! +----6 ----------RA --9 ! ! +--7xsx_a ! ! +----5 ----------RC ! +-7 +--6qld_f ! ! ! --RG--RC---- ! ! ! +6fq8_A ! ! ! +-3 --RGYA--LC-- +---------------8 +-----------4 +5mlu_A ! ! --RG-------- ! +6y5d_Q ! --RT--RG---- ! +6pww_K +-------------2 HTRA----LTRC +5xm1_A |
> 6ftx_B:STRUCTURE OF THE CHROMATIN REMODELLING ENZYME CHD1 BOUND TO A UBIQUITINYLATED NUCLEOSOME
----RC +---6qld_f +-------------------4 ----RA ! +---7xsx_a ! LC---- ! +5mlu_A ! +---------2 LT--RC --7 ! ! +5xm1_A ! ! +-1 LT---- ! +-----------5 +4z5t_A ! ! ! ----RT ! ! ! +8g57_E +-6 +---------3 ----RA ! +7ea8_A ! --KT-- L +---------------------7cvo_A |
> 6iod_A:THE STRUCTURE OF UDGX IN COMPLEX WITH SINGLE-STRANDED DNA
DGDG------------LGRG---- +-----------6iod_A +---------1 ------RA----RCQTNT--QGTC +---3 +-----------2dp6_A ! ! ------------------RG---- --4 +---------------------1mwi_A ! ----KT----CGQT--PG------ ! +------------4z47_A +------------2 --------TT-------------- +------------4yig_E |
> 6ir9_e:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH ELF1 AND SPT4/5, STALLED AT SHL(-1) OF THE NUCLEOSOME
RA------LT------RG +8eue_E +-------2 RTYT----------RG-- ! +7k6p_A +-----4 RA------LT----RC-- ! ! +5xm1_A ! +-------1 RT--RG------------ +-------7 +6pww_K ! ! RGYA----------RT-- ! ! +-----7wlr_E ! +-------3 --------------RA-- +-8 +-----7xsx_a ! ! ------RAAA--NA---- ! ! +--------1jfi_B ! ! +--5 ----------IT------ +-9 +---------6 +--------6r8y_H ! ! ! --------------RT-- ! ! +-----------7lyb_G +-10 ! --------------RG-- ! ! +----------------------5t5k_E -11 ! --------------RA-- ! +-----------------------6t7a_C ! --------------RG-- +------------------------7e9c_G |
> 6iy2_A:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
HTRG------RT +8g57_E +----------2 --RT--RG---- ! +6pww_K +-7 --RGYA--LC-- ! ! +5mlu_A ! +----------3 HTRA----LTRC ! ! +5xm1_A +-8 +-1 --RA----LT-- ! ! +4z5t_A ! ! --RG--RC---- ! ! +6fq8_A --9 +-----------4 --RG-------- ! +6y5d_Q ! --RT------RA ! +-------7ea8_A +------6 ----------RA ! +--7xsx_a +----5 ----------RC +--6qld_f |
> 6iy2_G:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
----RC +---6qld_f +-------------------------4 ----RA +-6 +---7xsx_a ! ! --KT-- L ! +-----------------------------7cvo_A ! LC---- --7 +5mlu_A ! +---------2 LT--RC ! ! ! +5xm1_A ! ! +-1 LT---- +-------------------5 +4z5t_A ! ----RT ! +8g57_E +---------3 ----RA +7ea8_A |
> 6iy2_H:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL2 IN ADP STATE
RG-------- +-----------------------------7k63_H +-7 RG-------- ! +-----------------------------3x1t_H +-8 --------RC ! ! +---6qld_f ! +-------------------------4 --------RA ! +---7xsx_a ! --LC------ ! +5mlu_A --9 +-2 --------RT ! ! +8g57_E ! +-------3 ----LT--RC ! ! ! +5xm1_A ! +-------------5 +-1 --LT------ ! ! ! +4z5t_A +-------6 ! --------RA ! +-------7ea8_A ! ------KT-- L +---------------------7cvo_A |
> 6iy3_D:STRUCTURE OF SNF2-MMTV-A NUCLEOSOME COMPLEX AT SHL-2 IN ADP STATE
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RC ! ! +---6qld_f ! +-------------------------4 ------RA ! +---7xsx_a ! --LC---- ! +5mlu_A --9 +-2 ------RT ! ! +8g57_E ! +-------3 --LT--RC ! ! ! +5xm1_A ! +-------------5 +-1 --LT---- ! ! ! +4z5t_A +-------6 ! ------RA ! +-------7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 6j99_D:CRYO-EM STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH AN H2B- MONOUBIQUITINATED NUCLEOSOME
RG-------- +-----------------------------7k63_H +-7 RG-------- ! +-----------------------------3x1t_H +-8 --------RC ! ! +---6qld_f ! +-------------------------4 --------RA ! +---7xsx_a ! --LC------ --9 +5mlu_A ! +--------------2 --LT------ ! ! +4z5t_A ! +------5 ----LT--RC ! ! ! +5xm1_A ! ! ! +-1 --------RT +-------6 +--------------3 +8g57_E ! ! --------RA ! +7ea8_A ! ------KT-- L +---------------------7cvo_A |
> 6jbx_A:CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE FABT IN COMPLEX WITH DNA
----DCLT--AGTTRGRG--RA L +-----------------5h3r_A +-----------1 ----ST----TC--QGRG---- +-2 +-----------------7b24_C ! ! --STSTQAQGSTSART--KT-- L --3 +-----------------------------5trd_B ! RT------TCTGYTRT------ +-----------------------------7vpz_N |
> 6jm9_A:CRYO-EM STRUCTURE OF DOT1L BOUND TO UNMODIFIED NUCLEOSOME
--RA----LT---- +-----------------------------4z5t_A ! --RGYA--LC---- ! +5mlu_A ! ! HTRA----LT--RC ! +-------3 +5xm1_A ! ! ! +-1 HTRG--------RT ! ! +-2 +8g57_E ! +-6 ! --RT--RG------ -10 ! ! +6pww_K ! ! ! --RT--------RA ! +--7 +-------7ea8_A ! ! ! ------------RA ! ! ! +--7xsx_a ! +------------8 +------5 ------------RC ! ! ! +--6qld_f ! ! ! --RG--RC------ +---9 ! +6fq8_A ! +-----------4 --RG---------- ! +6y5d_Q ! ----------KT-- L +-------------------------7cvo_A |
> 6lui_A:CRYSTAL STRUCTURE OF THE SAMD1 WH DOMAIN AND DNA COMPLEX
KGQG-------------------- +-----------------------------8h7a_A +-1 ----DT--RTRGTT------KT-- L +-2 +-----------------------------2o8k_A ! ! ------ITRGECSCSGKG------ L --3 +-----------------------------5i2d_R ! ----------DCKT--RGSTRGYC L +-----------------------------4uno_A |
> 6nj9_H:ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 2-TO-1 COMPLEX
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RA ! ! +--7xsx_a ! +--------------------------4 ------RC ! +--6qld_f ! --LC---- ! +5mlu_A --9 +-2 --LT--RC ! ! ! +5xm1_A ! +-------3 +-1 ------RT ! ! ! +8g57_E ! +-------------5 ! --LT---- ! ! ! +4z5t_A +-------6 ! ------RA ! +-------7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 6nn6_D:STRUCTURE OF DOT1L-H2BK120UB NUCLEOSOME COMPLEX
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RA ! ! +--7xsx_a ! +--------------------------4 ------RC ! +--6qld_f ! --LC---- ! +5mlu_A --9 +---------2 --LT--RC ! ! ! +5xm1_A ! ! +-1 --LT---- ! +-----------5 +4z5t_A ! ! ! ------RT ! ! ! +8g57_E +-------6 +---------3 ------RA ! +7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 6nqa_A:ACTIVE STATE DOT1L BOUND TO THE H2B-UBIQUITINATED NUCLEOSOME, 1-TO-1 COMPLEX
--RG----RT +8cww_A +---------1 HTRG----RT ! +8g57_E +----5 --RA--LTRC ! ! +------6jm9_A ! +--3 --------RA +------6 ! +--7xsx_a ! ! +---2 --------RC ! ! +--6qld_f +-8 ! --RG----RG ! ! +--------------7yqk_E +-10 ! --RT----RG ! ! +---------------------7uv9_E +-11 ! --RGYALCRT ! ! +----------------------8byq_e +-12 ! ------LT-- ! ! +-----------------------7ywx_E ! ! HARA--LTRC ! +--------------------------3kwq_E ! --RT--LARG +-13 +---------7unc_a ! ! +---------4 --------RT ! ! +--7 +---------7lyb_G ! ! ! ! --RG--LC-- +-14 +----9 +-------------------8bvw_e ! ! ! --RG------ ! ! +----------------------6a5l_e -15 ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 6ppr_B:CRYO-EM STRUCTURE OF ADNA(D934A)-ADNB(D1014A) IN COMPLEX WITH AMPPNP AND DNA
FG--RTHGLT--FT------WTRG----RT--HT--ST---- L +-------------6ppr_B +---------1 ------HT----FT------WTRT----RT--HT----ETFT +---2 +-------------3pjr_A ! ! FTTT--HT----FTDTYT--WTRT----RT------------ L +-3 +-----------------------2pjr_A ! ! --------------------------------HTKT------ --4 +---------------------------2pjr_B ! ----------LT------VT----PTET--RT---------- L +----------------------------7otj_B |
> 6pwe_G:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
--RC +--6qld_f +--------4 LTRC ! ! +3kwq_E ! +--2 LGRA L +-5 +8he5_a ! ! --RA ! ! +7xsx_a +---6 +-----------1 --RG ! ! +7uv9_E ! ! LT-- +-7 ! +-7ywx_E ! ! +-----------3 --RT ! ! +-8cww_A +-8 ! LC-- ! ! +-----------------8bvw_e --9 ! LARG ! +-------------------7unc_a ! --RT +--------------------8siy_G |
> 6pwe_H:CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
RG---- +-----------------------7k6p_D ! ----RA ! +7xsx_a ! +--------1 ----RG ! ! +7unc_a ! +------4 ----RC --8 ! ! +--6qld_f ! ! +-----3 ----RA L ! +----5 +--8he5_a ! ! ! --LTRC ! ! ! +3kwq_E ! +-6 +---------------2 ----RT ! ! ! +8siy_G +-7 ! ----RT ! +--------------------8cww_A ! ----RG +---------------------7uv9_E |
> 6pww_K:CRYO-EM STRUCTURE OF MLL1 IN COMPLEX WITH RBBP5 AND WDR5 BOUND TO THE NUCLEOSOME
--RA------LT------RG +8eue_E ! --RT--RG------------ +---------3 +6pww_K ! ! +-1 HGRTYT----------RG-- ! +-2 +7k6p_A +--------6 ! HTRA------LT----RC-- ! ! +5xm1_A ! ! --RGYA----------RT-- +--7 ! +-----7wlr_E ! ! +----4 ----------------RA-- ! ! +-----7xsx_a ! ! ----------------RT-- +-9 +-------------------7lyb_G ! ! --------RAAA--NA---- ! ! +--------1jfi_B ! ! +------------5 ------------IT------ +-10 +-8 +--------6r8y_H ! ! ! ----------------RG-- ! ! +---------------------5t5k_E -11 ! ----------------RA-- ! +-----------------------6t7a_C ! ----------------RG-- +------------------------7e9c_G |
> 6qil_A:THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
----LT----NTHG--RT--YTPT--------------------RT-- L +---------6qil_A +---------2 --------------------NAST--RGHT----STLT------KA-- L ! +---------2c6y_A +-5 ------------YAQTTC----QC------------------------ L ! ! +5k5q_D ! ! +--------------1 ----------ST--PTTC--STQC------RA---------------- L +-6 +---4 +1ddn_B ! ! ! ----------------------NAST--HT----STLT---------- L ! ! +---------------7cby_C +-7 ! ----LT----NTHGTA----YTRG------------------KG--QA ! ! +--------------------2efw_A +-8 ! ------RA--ST--ECTT--RAKA------------------HT---- ! ! +----------------------7oz3_B +-9 ! QA--------------------------------------------NG ! ! +-----------------------7k63_U +-10 ! --RC------------------------------------------SG ! ! +------------------------7cow_T +-11 ! --------------------NAST--RTHT----ST------------ ! ! +-------------------------3co7_C +-12 ! --------------------NAST--RGHTNT--STLT---------- L ! ! +-------------------------7fj2_B ! ! ------ETNTSCRGHC----RT--------------------QA---- +-13 +--------------------------5d4s_B ! ! ----------------QTNAST--RGHT----STLA------------ L ! ! +--------------2hdc_A +-14 +-----------3 ----------TC--TC--KGTCHT--ST-------------------- L ! ! +--------------7ve5_B +-15 ! ----------------------------YG------------------ ! ! +---------------------------3eyi_B +-16 ! ----------NT--TCTA------------------------RT---- L ! ! +----------------------------5zux_A +-17 ! ----------------------RG----YG------------------ ! ! +----------------------------1qbj_C +-18 ! ----------RG----DTVT----STRG------------WT------ L ! ! +----------------------------6lxn_A +-19 ! --------------DCKT----RGST--RGYA---------------- L ! ! +----------------------------4bnc_A +-20 ! ----YA----KTPTPG----YTRG------------------------ L ! ! +----------------------------4mtd_D -21 ! --------------DCKT----RGAT--RCYA---------------- L ! +----------------------------5e8i_D ! --------------TTHT----KG--------------RC-------- L +----------------------------7b0c_A |
> 6qld_f:STRUCTURE OF INNER KINETOCHORE CCAN-CENP-A COMPLEX
--RC +--6qld_f +-------3 LTRC ! ! +3kwq_E +------4 +--1 LGRA L ! ! +8he5_a ! ! --RT ! +----------8siy_G +---6 --RA ! ! +7xsx_a ! ! +--------------2 --RT +-7 +--5 +8cww_A ! ! ! --RG ! ! +--------------7uv9_E +-8 ! LT-- ! ! +---------------------7ywx_E --9 ! LC-- ! +----------------------8bvw_e ! LARG +-----------------------7unc_a |
> 6r1t_D:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 1, FREE NUCLESOME
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RA ! ! +--7xsx_a ! +--------------------------4 ------RC ! +--6qld_f ! --LC---- ! +5mlu_A --9 +-1 ------RT ! +---------3 +8g57_E ! ! ! --LT---- ! +-----------5 +4z5t_A ! ! ! --LT--RC ! ! ! +5xm1_A +-------6 +---------2 ------RA ! +7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 6r25_E:STRUCTURE OF LSD2/NPAC-LINKER/NUCLEOSOME CORE PARTICLE COMPLEX: CLASS 3
--RG----RG +7yqk_E +-----------------------1 HTRG----RT ! +8g57_E ! --RGYALCRT ! +------------------8byq_e ! ! --RA--LTRC ! +-6 +------6jm9_A +-11 ! ! +-------3 --------RA ! ! ! ! ! ! +--7xsx_a ! ! ! +---5 +---2 --------RC ! ! +-8 ! +--6qld_f ! ! ! ! ! --RT----RG +-12 ! ! ! +--------------7uv9_E ! ! +-9 ! ------LT-- ! ! ! +--------------------7ywx_E ! ! ! --RG----RT ! ! +---------------------8cww_A ! ! HARA--LTRC +-13 +--------------------------3kwq_E ! ! --RG--LC-- ! ! +---------8bvw_e ! ! +---------4 --------RT ! ! +--7 +---------7lyb_G +-14 ! ! ! --RT--LARG ! ! +---10 +-------------------7unc_a ! ! ! --RG------ -15 ! +----------------------6a5l_e ! ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 6r2v_C:ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
----RT +----7lyb_G +-----------3 --LTRC ! +----3kwq_E +----------6 ----RT ! ! +--1u35_G ! ! +-------------2 ----RG ! +-5 +--7uv9_E ! ! --LC-- +-10 +----------------8bvw_e ! ! RG---- ! ! +-------------------------7k6p_D ! ! ! --LCRT ! ! ! +8byq_e ! ! ! +--------------1 ----RT ! +-9 +----4 +8g57_E +-11 ! ! ! ----RT ! ! ! +--7 +--------------8cww_A ! ! ! ! ! ----RG ! ! +--8 +-------------------7yqk_E +-12 ! ! --LTRC ! ! ! +----------------------6jm9_A ! ! ! ----RA -13 ! +-----------------------------1kx5_G ! ! RG---- ! +-----------------------------3x1t_H ! ----RT +-----------------------------7zs9_e |
> 6r8y_H:CRYO-EM STRUCTURE OF NCP-6-4PP(-1)-UV-DDB
RG-------- +-----------------------------7k60_H ! RG-------- ! +----------------------7k6p_D ! ! --------RC ! ! +--6qld_f ! ! +-------3 --------RA ! ! ! ! +7xsx_a ! +-11 +----5 +--1 ------LTRC ! ! ! ! ! +3kwq_E -14 ! ! +-7 ! ----LC---- ! ! ! ! ! +----------8bvw_e ! ! ! ! ! ----LA--RG ! +-12 +-----8 +---------------7unc_a ! ! ! ! --------RT ! ! ! ! +----7lyb_G ! ! ! +-----------4 --------RG ! ! ! +----7uv9_E ! ! ! --------RA ! ! +-------------------------1kx5_G +-13 --------RT ! +8cww_A ! +--------------2 --------RT ! +----6 +8g57_E ! ! ! --LC----RT ! +--9 +--------------8byq_e ! ! ! --------RG +--10 +-------------------7yqk_E ! ----LT--RC +----------------------6jm9_A |
> 6t7a_C:STRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
--RC +--6qld_f +----3 LTRC ! +--3kwq_E +----4 --RA ! ! +7xsx_a ! ! +-1 LT-- +--5 +------2 +7ywx_E ! ! ! --RG ! ! +7uv9_E +-6 ! LGRA L ! ! +------------8he5_a +-7 ! LARG ! ! +---------------7unc_a +-8 ! LC-- ! ! +-----------------8bvw_e --9 ! --RT ! +-------------------8cww_A ! --RT +--------------------8siy_G |
> 6uph_D:STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
RG------ +7k6p_D +------------------1 RG------ +----------6 +3x1t_H ! ! ------RT +-8 +------------------8g57_E ! ! ------RA ! +-----------------------------1kx5_G ! ------RT ! +--1u35_G +-9 +-------------2 ------RG ! ! +-4 +--7uv9_E ! ! ! ! --LC---- ! ! +--5 +----------------8bvw_e ! ! ! ! ------RT +-10 ! ! ! +----7lyb_G ! ! +---------7 +-----------3 ----LTRC ! ! ! +----3kwq_E ! ! ! ------RT +-11 ! +-------------------8cww_A ! ! ! --LC--RT ! ! +-----------------------------8byq_e +-12 ! --LT--RC ! ! +-----------------------------6jm9_A -13 ! ------RG ! +-----------------------------7yqk_E ! ------RT +-----------------------------7zs9_e |
> 6vdk_A:CRYOEM STRUCTURE OF HIV-1 CONSERVED INTASOME CORE
------KT--------QT----PAQG--AGECRGQG---- L +----------7u32_A +------------------1 ----RT----------------PATA----QCRG------ L +-2 +----------6voy_C ! ! TGRTYTTTQT--------------QGTT--ECRCQAAATC L --3 +-----------------------------8b4h_A ! ----------YGLIRG--QIII------------------ +-----------------------------2w36_A |
> 6vgm_D:CRYSTAL STRUCTURE OF DPO4 WITH 8-OXOADENINE (OXOA) AND DTTP*
----VT------AT------PC----------------------LA------RT--RA +-----------------------------4ruc_A ! ------FT------------PT----------ST----------LTIT----RG--RA ! +2agp_B ! +--------------1 ----VC------AC------------------------------LG--SC------RA ! +----2 +4fbt_A ! ! ! ----VTFT----AT------PC----------ST----------LA----RART--RG --7 +--3 +--------------1jx4_A ! ! ! FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT ! +-4 +-------------------4tqr_A ! ! ! ----QT--WA------RTST--------------ST----TA--LT--RG--MTFT-- ! +---5 +----------------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG-------------- +-6 +------------------------6x6z_A ! ------------------------------KT-------------------------- +----------------------------7c97_K |
> 6vnp_D:CRYSTAL STRUCTURE OF DPO4 EXTENSION PAST 8-OXOADENINE (OXOA) AND DT
----VT------AT------PC----------------------LA------RT--RA +-----------------------------4ruc_A +-6 ----VC------AC------------------------------LG--SC------RA ! +-----------------------------4fbt_A ! ------FT------------PT----------ST----------LTIT----RG--RA ! +2agp_B ! +--------------1 ----VTFT----AT------PC----------ST----------LA----RART--RG --7 +-----2 +1jx4_A ! ! ! FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT ! +-3 +--------------4tqr_A ! ! ! ----QT--WA------RTST--------------ST--PATA----LT----MTFT-- ! +-----4 +--------------------3jaa_A ! ! ! ----------ST--------WG--------------DTWC--MG-------------- +-5 +----------------------6x6z_A ! ------------------------------KT-------------------------- +----------------------------7c97_K |
> 6wkr_K:PRC2-AEBP2-JARID2 BOUND TO H2AK119UB1 NUCLEOSOME
----RC +---6qld_f +-------------------------3 ----RA +-5 +---7xsx_a ! ! --KT-- L +-6 +-----------------------------7cvo_A ! ! LT---- ! +-----------------------------4z5t_A --7 LC---- ! +5mlu_A ! +-------2 LT--RC ! ! +5xm1_A +---------------------4 ----RA ! +7ea8_A +-------1 ----RT +8g57_E |
> 6x59_H:THE MOUSE CGAS CATALYTIC DOMAIN BINDING TO HUMAN ASSEMBLED NUCLEOSOME
RG---- +7k6p_D +--------------------------2 RG---- ! +3x1t_H ! ----RG +-9 +7uv9_E ! ! +--------------1 ----RT ! ! +----5 +8g57_E ! ! ! ! --LCRT ! +------8 +--------------8byq_e ! ! ----RG +-10 +-------------------7yqk_E ! ! ----RT ! ! +---1u35_G ! ! +------------3 --LTRC ! ! +-6 +---3kwq_E ! ! ! ! ----RT +-11 +----------7 +----------------8cww_A ! ! ! ----RT ! ! ! +----7lyb_G ! ! +-----------4 --LC-- +-12 ! +----8bvw_e ! ! ! ----RA ! ! +-----------------------------1kx5_G -13 ! --LTRC ! +-----------------------------6jm9_A ! ----RT +-----------------------------7zs9_e |
> 6yov_C:OCT4-SOX2-BOUND NUCLEOSOME - SHL+6
--RC +--6qld_f +-----4 LTRC ! ! +3kwq_E ! +--2 LGRA L ! +8he5_a +--5 --RA ! ! +7xsx_a ! ! +-1 LT-- +-----6 +-------3 +7ywx_E ! ! ! LARG ! ! +7unc_a +-7 ! --RT ! ! +-----------8siy_G +-8 ! LC-- ! ! +-----------------8bvw_e --9 ! --RG ! +-------------------7uv9_E ! --RT +--------------------8cww_A |
> 6z6p_F:HDAC-PC-NUC
----RC +---6qld_f +--------------------4 ----RA ! +---7xsx_a ! LC---- +----6 +5mlu_A ! ! +--------------2 LT---- ! ! ! +4z5t_A ! +---------5 LT--RC ! ! +5xm1_A --7 ! +-1 ----RT ! +--------------3 +8g57_E ! ! ----RA ! +7ea8_A ! --KT-- L +-----------------------------7cvo_A |
> 7at8_D:HISTONE H3 RECOGNITION BY NUCLEOSOME-BOUND PRC2 SUBUNIT EZH2.
HTRG----RT +-----------------------8g57_E ! --RG----RG ! +---------------------7yqk_E ! ! --RGYALCRT ! ! +------------------8byq_e +-11 ! ! --RA--LTRC ! ! +-8 +-5 +------6jm9_A ! ! ! ! ! ! +-------2 --------RA ! ! ! ! ! ! ! ! +--7xsx_a ! ! ! ! ! +---4 +---1 --------RC ! ! ! +-7 ! +--6qld_f +-12 +-10 ! ! --RT----RG ! ! ! ! +--------------7uv9_E ! ! ! ! ------LT-- ! ! ! +--------------------7ywx_E ! ! ! --RG----RT ! ! +-----------------------8cww_A ! ! HARA--LTRC +-13 +--------------------------3kwq_E ! ! --RG--LC-- ! ! +---------8bvw_e ! ! +---------3 --------RT ! ! +--6 +---------7lyb_G +-14 ! ! ! --RT--LARG ! ! +----9 +-------------------7unc_a ! ! ! --RG------ -15 ! +----------------------6a5l_e ! ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 7b5y_B:S. AGALACTIAE BUSR IN COMPLEX WITH ITS BUSAB-PROMOTOR DNA
--------------------------------NT--ATAT----RG L +5t01_B +-----------------------------1 ----------------------------RGNT--ATAT--CTRA-- L +-3 +7x5e_F ! ! ------------NASTRGHTSTLT---------------------- L +-4 +-----------------------------2c6y_A ! ! --STSTQAQGSTSART----------KT------------------ L ! ! +---------------------5trd_B --5 +-------2 --------SCYG--KA--QG--RGQT-------------------- L ! +---------------------6y42_B ! RT------TCTGYTRT------------------------------ +-----------------------------7vpz_N |
> 7bzg_B:STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
--------------------------------RT +-----------------------------3gfi_A +-1 ------TC--STKTPTTTFT------------RT +-2 +-----------------------------4ass_H ! ! ----------TT--RGRT--------SGRT--KT L +-3 +-----------------------------2v1u_A ! ! ----------DCLT--AGTTRG--RG------RA L +-4 +-----------------------------5h3r_A ! ! ------YC--KTHGSTQTYTPT--------LG-- L +-5 +-----------------------------5x11_A ! ! ------SGQG--YCNC------------------ +-6 +-----------------------------2ve9_C ! ! ----------------------YG---------- --7 +-----------------------------2heo_D ! RGRTKG---------------------------- L +-----------------------------6lui_A |
> 7ccr_A:STRUCTURE OF THE 2:2 CGAS-NUCLEOSOME COMPLEX
----LT--RC +5xm1_A +-1 ----LT---- +---------2 +4z5t_A ! ! YA--LC---- +-6 +5mlu_A ! ! --------RT ! ! +8g57_E +-7 +---------3 --RG------ ! ! +6pww_K ! ! --------RA +-----------8 +------------7ea8_A ! ! --RC------ ! ! +-------6fq8_A ! +-----5 --------RA --9 ! +--7xsx_a ! +----4 --------RC ! +--6qld_f ! ------KT-- L +-------------------------7cvo_A |
> 7cuh_A:CRYSTAL STRUCTURE OF FISSION YEAST POT1 AND SSDNA
--STTTDTQCHCFTKTTGRCYC--QCLG--KGDG--KGWTYTKGNGYGFAMA----RGRTIGWGDG----KG--DA--LTYAEGIGHGDGSGAGRGYG-- L +--------------7cuh_A +-------1 ------------------------------------KGWGYT----YCFAMASGSGRGRTIGWGDG----KG--DTHTLTYAEGIGHG------------ L +---2 +--------------4hja_A ! ! NGSTTTDTQCHCFA--TGRGYCRCQCLGSGKGDG------------------------------------------------------------------ +-3 +----------------------6bwy_A ! ! ----------------------------------YT--------------------------YGDGST----HT----------------------YTRT L --4 +--------------------------7qxs_P ! ----------------------------------QT----------------------RTWT----LTTT--KT--FTQT----ST------------HT +---------------------------4gnx_B |
> 7cvo_A:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
LTRC +3kwq_E +--------------1 LGRA L +--------------2 +8he5_a ! ! --RT +-3 +--------------8siy_G ! ! LC-- +-4 +-----------------------------8bvw_e ! ! --RT --5 +-----------------------------8cww_A ! --RG +-----------------------------7uv9_E |
> 7cvo_B:CRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
LTRC +3kwq_E +--------------1 LGRA L +--------------2 +8he5_a ! ! --RT +-3 +--------------8siy_G ! ! LC-- +-4 +-----------------------------8bvw_e ! ! --RG --5 +-----------------------------7uv9_E ! --RT +-----------------------------8cww_A |
> 7d1z_H:CRYO-EM STRUCTURE OF SET8-NUCLEOSOME COMPLEX
----RC +---6qld_f +-------------------------4 ----RA ! +---7xsx_a ! LC---- ! +5mlu_A ! +---------2 LT--RC --7 ! ! +5xm1_A ! ! +-1 LT---- ! +-----------5 +4z5t_A ! ! ! ----RT ! ! ! +8g57_E +-------6 +---------3 ----RA ! +7ea8_A ! --KT-- L +---------------------7cvo_A |
> 7d69_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
LTRC +3kwq_E +--------------1 LGRA L +--------------2 +8he5_a ! ! --RT +-3 +--------------8siy_G ! ! LC-- +-4 +-----------------------------8bvw_e ! ! --RG --5 +-----------------------------7uv9_E ! --RT +-----------------------------8cww_A |
> 7d69_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
LTRC +3kwq_E +--------------1 LGRA L +--------------2 +8he5_a ! ! --RT +-3 +--------------8siy_G ! ! --RG +-4 +-----------------------------7uv9_E ! ! LC-- --5 +-----------------------------8bvw_e ! --RT +-----------------------------8cww_A |
> 7d69_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
LTRC +3kwq_E +--------------1 LGRA L +--------------2 +8he5_a ! ! --RT +-3 +--------------8siy_G ! ! --RG +-4 +-----------------------------7uv9_E ! ! --RT --5 +-----------------------------8cww_A ! LC-- +-----------------------------8bvw_e |
> 7d69_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
LC---- +-----------------------------8bvw_e +-2 --LGRA L ! +-----------------------------8he5_a +-3 --LTRC ! ! +3kwq_E +-4 +-----------------------------1 ----RT ! ! +8siy_G --5 ! ----RG ! +-----------------------------7uv9_E ! ----RT +-----------------------------8cww_A |
> 7e9c_A:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
RG------RT +------------------------8g57_E ! RG------RT ! +-----------------------8cww_A ! ! RA----LTRC ! ! +-------6jm9_A ! ! +---------3 --------RC +-12 ! ! +-------6qld_f ! ! +-10 +--5 ------LT-- ! ! ! ! ! ! +-----7ywx_E ! ! ! ! ! +-----------2 --------RA ! ! ! ! +-7 ! +-7xsx_a ! ! ! ! ! ! +---1 ----RG---- ! +-11 ! ! ! +-7k6p_D +-13 ! +-8 ! RT------RG ! ! ! ! +--------------------7uv9_E ! ! ! ! RGYA--LCRT ! ! ! +---------------------8byq_e ! ! ! RG------RG +-14 ! +-----------------------7yqk_E ! ! ! RA----LTRC ! ! +---------------------------3kwq_E ! ! RG-------- ! ! +----------------------6a5l_e ! ! ! RG----LC-- +-15 +----9 +---------8bvw_e ! ! ! +---------4 --------RT ! ! +--6 +---------7lyb_G ! ! ! RT----LARG -16 ! +-------------------7unc_a ! ! RA-------- ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 7e9c_G:CRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
--RC +---6qld_f +-------2 --RA ! ! +7xsx_a +-----------------3 +---1 LGRA L ! ! +8he5_a --4 ! --RT ! +-----------8siy_G ! LC-- +-----------------------------5mlu_A |
> 7ea5_E:YEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
--RG--LC-- +---------8bvw_e +---------4 --------RT +--7 +---------7lyb_G ! ! --RT--LARG +----9 +-------------------7unc_a ! ! --RG------ ! +----------------------6a5l_e ! --RA--LTRC ! +6jm9_A ! +--------------------1 HTRG----RT ! ! +8g57_E ! ! --RGYALCRT ! +--8 +--------------8byq_e +-13 ! ! +---5 --RT----RG ! ! ! ! ! ! +------7uv9_E ! ! ! ! ! +-------3 --------RA ! ! ! +-6 ! +--7xsx_a ! ! +-10 ! +---2 --------RC ! ! ! ! ! +--6qld_f ! ! ! ! ! ------LT-- +-14 ! +-11 ! +------------------7ywx_E ! ! ! ! ! ! --RG----RG ! ! ! ! ! +-----------------------7yqk_E ! ! +-12 ! --RG----RT ! ! ! +-----------------------8cww_A -15 ! ! HARA--LTRC ! ! +--------------------------3kwq_E ! ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 7ea5_H:YEAST SET2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
----RC +---6qld_f +-------------------------4 ----RA ! +---7xsx_a ! LC---- ! +5mlu_A --7 +--------------1 LT---- ! ! +4z5t_A ! +------5 ----RT ! ! ! +8g57_E ! ! ! +-2 ----RA +-------6 +--------------3 +7ea8_A ! ! LT--RC ! +5xm1_A ! --KT-- L +---------------------7cvo_A |
> 7ea8_A:HUMAN SETD2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
HTRG----RT +-----------------------8g57_E ! --RGYALCRT ! +------------------8byq_e ! ! --RA--LTRC ! +-5 +------6jm9_A ! ! ! +-------2 --------RA +-11 ! ! ! ! +--7xsx_a ! ! ! +---4 +---1 --------RC ! ! +-7 ! +--6qld_f ! ! ! ! ! --RT----RG ! ! ! ! +--------------7uv9_E ! ! +-8 ! ------LT-- +-12 ! ! ! +--------------------7ywx_E ! ! +-10 ! --RG----RG ! ! ! +---------------------7yqk_E ! ! ! --RG----RT ! ! +-----------------------8cww_A ! ! HARA--LTRC +-13 +--------------------------3kwq_E ! ! --RG--LC-- ! ! +---------8bvw_e ! ! +---------3 --------RT ! ! +--6 +---------7lyb_G +-14 ! ! ! --RT--LARG ! ! +----9 +-------------------7unc_a ! ! ! --RG------ -15 ! +----------------------6a5l_e ! ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 7eg6_A:SNF5 FINGER HELIX BOUND TO THE NUCLEOSOME
HTRG------RT +------------------------8g57_E ! --RG------RG ! +-----------------------7yqk_E ! ! --RGYA--LCRT ! ! +---------------------8byq_e +-12 +-10 ! --RA----LTRC ! ! ! ! ! +-------6jm9_A ! ! ! ! ! +---------3 ----------RC ! ! ! +-8 ! +-------6qld_f ! ! ! ! +--5 --------LT-- ! ! ! ! ! ! +-----7ywx_E ! +-11 ! ! +-----------2 ----------RA +-13 ! +-7 ! +-7xsx_a ! ! ! ! +---1 ------RG---- ! ! ! ! +-7k6p_D ! ! ! ! --RT------RG ! ! ! +--------------------7uv9_E ! ! ! --RG------RT ! ! +-----------------------8cww_A +-14 ! HARA----LTRC ! ! +---------------------------3kwq_E ! ! --RG----LC-- ! ! +---------8bvw_e ! ! +---------4 ----------RT +-15 ! +--6 +---------7lyb_G ! ! ! ! ! --RT----LARG ! ! +----9 +-------------------7unc_a ! ! ! --RG-------- -16 ! +----------------------6a5l_e ! ! --RA-------- ! +-----------------------------6kxv_A ! ----------RA +-----------------------------1kx5_G |
> 7egp_S:THE STRUCTURE OF SWI/SNF-NUCLEOSOME COMPLEX
--LC-- +------------------------8bvw_e ! ----RT +-7 +------------------8cww_A ! ! ! ----RG ! +-----6 +------7uv9_E ! ! +-------3 ----RA ! ! ! ! +--7xsx_a +-8 +---4 +---2 ----RC ! ! ! +--6qld_f ! ! ! --LT-- ! ! +--------------7ywx_E --9 ! --LARG ! +-------------------------7unc_a ! --LTRC ! +3kwq_E ! +--------------1 --LGRA L +-----------5 +8he5_a ! YG--RT +--------------8siy_G |
> 7el3_B:CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII
--DCLT--AGTTRGRG--RA L +-----------------5h3r_A +-------1 --ST----TC--QGRG---- +---2 +-----------------7b24_C ! ! STSTQAQGSTSART--KT-- L --3 +-------------------------5trd_B ! --ITRGECSCSGKG------ L +-----------------------------5i2d_R |
> 7jzv_N:CRYO-EM STRUCTURE OF THE BRCA1-UBCH5C/BARD1 E3-E2 MODULE BOUND TO A NUCLEOSOME
----RC +--6qld_f +------3 --LTRC ! +--3kwq_E +--4 ----RA ! ! +7xsx_a ! +---------1 ----RG +--5 +7uv9_E ! ! --LT-- ! ! +-7ywx_E +-6 +----------2 --LARG ! ! +-7unc_a +-7 ! --LGRA L ! ! +---------------8he5_a +---8 ! LC---- ! ! +-----------------8bvw_e --9 ! ----RT ! +-------------------8cww_A ! ----RT +-----------------------8siy_G |
> 7k6p_A:ACTIVE STATE DOT1 BOUND TO THE UNACETYLATED H4 NUCLEOSOME
HTRG--------RT +8g57_E +---------1 --RT--RG------ ! +6pww_K ! HTRA----LT--RC +---7 +5xm1_A ! ! +------2 --RT--------RA ! ! ! +7ea8_A ! +--6 ------------RA +-----------8 ! +--7xsx_a ! ! +---5 ------------RC ! ! +--6qld_f ! ! --RGYA--LC---- ! ! +5mlu_A +-9 +------------4 --RG--RC------ ! ! ! +6fq8_A ! ! +-3 --RG---------- -10 ! +6y5d_Q ! ! ----------KT-- L ! +-------------------------7cvo_A ! --RA----LT---- +--------------------------4z5t_A |
> 7k6p_D:ACTIVE STATE DOT1 BOUND TO THE UNACETYLATED H4 NUCLEOSOME
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RA ! ! +--7xsx_a ! +--------------------------4 ------RC ! +--6qld_f ! --LC---- --9 +5mlu_A ! +--------------1 --LT---- ! ! +4z5t_A ! +------5 ------RT ! ! ! +8g57_E ! ! ! +-2 ------RA +-------6 +--------------3 +7ea8_A ! ! --LT--RC ! +5xm1_A ! ----KT-- L +---------------------7cvo_A |
> 7ktq_D:NUCLEOSOME FROM A DIMERIC PRC2 BOUND TO A NUCLEOSOME
RG------ +-----------------------------3x1t_H +-7 RG------ ! +-----------------------------7k63_H +-8 ------RC ! ! +---6qld_f ! +-------------------------4 ------RA ! +---7xsx_a ! --LC---- --9 +5mlu_A ! +--------------2 --LT---- ! ! +4z5t_A ! +------5 --LT--RC ! ! ! +5xm1_A ! ! ! +-1 ------RT +-------6 +--------------3 +8g57_E ! ! ------RA ! +7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 7lv9_A:MARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
----RG +------7uv9_E +------3 ----RA ! ! +--7xsx_a +---4 +---2 ----RC ! ! +--6qld_f +----5 ! --LT-- ! ! +-------------7ywx_E ! ! ----RT +--6 +-----------------8cww_A ! ! --LTRC ! ! +3kwq_E +-7 +----------------------1 --LGRA L ! ! +8he5_a +-8 ! YG--RT ! ! +-------------------------8siy_G --9 ! --LC-- ! +--------------------------8bvw_e ! --LARG +--------------------------7unc_a |
> 7lya_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE WITH LINKED HISTONE PROTEINS H2A AND H2B
----RC +---6qld_f +-------------------------4 ----RA +-5 +---7xsx_a ! ! --KT-- L +-6 +-----------------------------7cvo_A ! ! LT---- ! +-----------------------------4z5t_A --7 LC---- ! +5mlu_A ! ! LT--RC +-----------------------------3 +5xm1_A ! +-1 ----RT +-2 +8g57_E ! ----RA +7ea8_A |
> 7lyb_G:CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE IN COMPLEX WITH BRCA1-BARD1-UBCH5C
--RC +--6qld_f +-----4 LTRC ! ! +3kwq_E ! +--2 LGRA L ! +8he5_a +------5 --RA ! ! +7xsx_a ! ! +-1 LT-- +-6 +-------3 +7ywx_E ! ! ! --RG ! ! +7uv9_E +-7 ! LC-- ! ! +---------------8bvw_e +-8 ! LARG ! ! +-----------------7unc_a --9 ! --RT ! +-------------------8cww_A ! --RT +--------------------8siy_G |
> 7m1x_C:CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z
--RA +--------------------------1kx5_G ! --RT ! +7lyb_G ! +--1 --RC ! ! +6qld_f ! +------4 --RA ! ! ! +7xsx_a +-11 +---5 +--2 LTRC ! ! ! ! +3kwq_E ! ! +----------6 ! LARG ! ! ! ! +---------7unc_a ! ! ! ! LC-- ! ! ! +-------------8bvw_e ! ! ! --RG ! +-10 +7uv9_E -12 ! +--------------3 --RT ! ! +----7 +8g57_E ! ! ! ! --RT ! ! +--8 +--------------8cww_A ! ! ! ! LCRT ! +-9 +-------------------8byq_e ! ! LTRC ! +----------------------6jm9_A ! --RG +-----------------------------7yqk_E |
> 7mca_I:STRUCTURE OF THE S. CEREVISIAE ORIGIN RECOGNITION COMPLEX BOUND TO THE REPLICATION INITIATOR CDC6 AND THE ARS1 ORIGIN DNA.
--NASTRGHTSTLTKA L +-----------------------------2c6y_A +-1 --NASTRGHTST---- L +-2 +-----------------------------2uzk_A ! ! --NASTRTHTST---- L --3 +-----------------------------3l2c_A ! HT-------------- L +-----------------------------6s3h_A |
> 7mcs_F:CRYO-ELECTRON MICROSCOPY STRUCTURE OF TNSC(1-503)A225V BOUND TO DNA
----RC-------------- +---------------7mcs_F +----------1 --------RT---------- +-2 +---------------7jk2_A ! ! --TT--RA------------ +-3 +--------------------------7jps_B ! ! FT----------YT------ --4 +---------------------------6qem_L ! ----------MT--RTRTIT L +----------------------------7jy6_F |
> 7n8n_B:MELBOURNEVIRUS NUCLEOSOME LIKE PARTICLE
RG-- +-----------------------------7k6p_D +-2 --RG +-3 +-----------------------------7uv9_E ! ! --RT +-4 +-----------------------------8siy_G ! ! --RC ! ! +3kwq_E --5 +-----------------------------1 --RA L ! +8he5_a ! --RT +-----------------------------8cww_A |
> 7nkx_a:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
LTRC +3kwq_E +--------------1 LGRA L +-------6 +8he5_a ! ! --RT ! +--------------8siy_G ! --RA +--7 +7xsx_a ! ! +-----2 --RT ! ! +------4 +8cww_A ! ! ! ! --RC ! +---------5 +-----6qld_f +-8 ! LT-- ! ! ! +7ywx_E ! ! +-----------3 --RG --9 ! +7uv9_E ! ! LARG ! +-------------------------7unc_a ! LC-- +--------------------------8bvw_e |
> 7nkx_f:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-CHD1 STRUCTURE
--RC +--6qld_f +-----------4 LGRA L ! +--8he5_a ! --RA +--6 +7xsx_a ! ! +-1 LT-- ! ! +---------3 +7ywx_E ! ! ! ! --RG +----7 +----5 +7uv9_E ! ! ! --RT ! ! +---------8cww_A ! ! LTRC +-8 ! +3kwq_E ! ! +-----------------2 --RT ! ! +8siy_G --9 ! LARG ! +----------------------7unc_a ! LC-- +-----------------------8bvw_e |
> 7nky_e:RNA POLYMERASE II-SPT4/5-NUCLEOSOME-FACT STRUCTURE
RG----RG +7yqk_E +---------1 RG----RT ! +8g57_E +----5 RA--LTRC ! ! +------6jm9_A ! +--3 ------RA +--6 ! +--7xsx_a ! ! +---2 ------RC ! ! +--6qld_f +----7 ! RGYALCRT ! ! +--------------8byq_e +-10 ! RG----RT ! ! +-----------------8cww_A +-11 ! RT----RG ! ! +----------------------7uv9_E +-12 ! ----LT-- ! ! +-----------------------7ywx_E ! ! RA--LTRC ! +--------------------------3kwq_E +-13 RG------ ! ! +----------------------6a5l_e ! ! ! RT--LARG ! +----9 +---------7unc_a +-14 ! +---------4 ------RT ! ! +--8 +---------7lyb_G ! ! ! RG--LC-- -15 ! +-------------------8bvw_e ! ! RA------ ! +-----------------------------6kxv_A ! ------RA +-----------------------------1kx5_G |
> 7on1_c:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
--RC +---6qld_f +------4 LTRC ! ! +3kwq_E ! +---2 --RT +-----5 +8siy_G ! ! --RA ! ! +7xsx_a ! +----------1 LGRA L +-----7 +8he5_a ! ! LT-- ! ! +-7ywx_E ! ! +-------------3 --RG +-8 +-6 +-7uv9_E ! ! ! LC-- ! ! +---------------8bvw_e --9 ! LARG ! +----------------------7unc_a ! --RT +-----------------------8cww_A |
> 7on1_e:CENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
LTRC +3kwq_E +-----------------------1 LGRA L ! +8he5_a ! --RG ! +------7uv9_E +--7 +-------4 --RA ! ! ! ! +--7xsx_a ! ! +-----5 +---3 --RC ! ! ! ! +--6qld_f ! ! ! ! --RT +-8 +--6 +--------------8cww_A ! ! ! LT-- ! ! ! +-7ywx_E ! ! +------------------2 --RT --9 ! +-8siy_G ! ! LARG ! +--------------------------7unc_a ! LC-- +--------------------------8bvw_e |
> 7oot_B:X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
ECKT--RGAT--RGHT----RA-- L +---4mhg_A +-1 --KT--RG----RGYT-------- L +------------------------2 +---4bqa_A ! ! --KT--RG----RGYA-------- L +-3 +----4l18_B ! ! ------NASTRGHT--ST------ L --4 +-----------------------------2uzk_A ! ----NAST--RGHT--STLT--KA L +-----------------------------2c6y_A |
> 7pza_B:STRUCTURE OF THE CLR-CAMP-DNA COMPLEX
KTQTSTRTETTA--RA------ L +--3iyd_H +--------------------------1 ----ITRGECSCSGKG------ L +-2 +--5i2d_R ! ! ------RTRGTT------KT-- L --3 +-----------------------------2o8k_A ! --------DCKT--RGSTRGYC L +-----------------------------4uno_A |
> 7r5s_W:STRUCTURE OF THE HUMAN CCAN BOUND TO ALPHA SATELLITE DNA
--LTRC +-----------------------------3kwq_E ! --LCRT +-8 +8byq_e ! ! +--------------1 ----RT ! +--------------5 +8g57_E ! ! --LTRC ! +--------------6jm9_A +-9 ----RT ! ! +---------7zs9_e ! ! +----------------4 ----RT ! ! ! +---------7lyb_G ! +--7 ----RT +-10 ! +---1u35_G ! ! ! +------------3 --LC-- ! ! +---------6 +---8bvw_e ! ! ! ----RT +-11 ! +----------------8cww_A ! ! ! ----RG ! ! +-----------------------------7uv9_E +-12 ! ----RG ! ! +-----------------------------7yqk_E ! ! ----RA -13 +-----------------------------1kx5_G ! RG---- ! +7k6p_D +-----------------------------2 RG---- +3x1t_H |
> 7scy_H:NUC147 BOUND TO SINGLE BRCT
----RC +---6qld_f +-------------------------4 ----RA ! +---7xsx_a ! LC---- ! +5mlu_A --7 +--------------1 LT---- ! ! +4z5t_A ! +------5 ----RT ! ! ! +8g57_E ! ! ! +-2 ----RA +-------6 +--------------3 +7ea8_A ! ! LT--RC ! +5xm1_A ! --KT-- L +---------------------7cvo_A |
> 7tdw_A:STRUCTURE OF FOXP3-DNA COMPLEX
KGQG---------------------- +-8h7a_A +---------------------------1 --------TCTG--YTRT-------- +-2 +-7vpz_N ! ! ----FGTTPTRTAT----LT------ L +-3 +-----------------------------4hqe_A ! ! ----DTRTRGTT----KT-------- L --4 +-----------------------------2o8k_A ! ------------KT----RGSTRGYC L +-----------------------------4uno_A |
> 7tdx_A:STRUCTURE OF FOXP3-DNA COMPLEX
KGQG---------------------- +-8h7a_A +---------------------------1 --------TCTG--YTRT-------- +-2 +-7vpz_N ! ! ------------KT----RGSTRGYC L +-3 +-----------------------------4uno_A ! ! ----FGTTPTRTAT----LT------ L --4 +-----------------------------4hqe_A ! ----DT--------RTRGTT--KT-- L +-----------------------------2o8k_A |
> 7unc_a:POL II-DSIF-SPT6-PAF1C-TFIIS COMPLEX WITH REWRAPPED NUCLEOSOME
HGRTYT------RG-- +7k6p_A +-1 --RT--RG-------- +-----2 +6pww_K ! ! HTRA----LT--RC-- +----------4 +5xm1_A ! ! ------------RA-- ! +-----7xsx_a +------6 --RA----LT----RG ! ! +8eue_E ! ! +--------3 --RGYA------RT-- +-7 +------5 +7wlr_E ! ! ! ------------RT-- ! ! +---------7lyb_G +-8 ! ------------RG-- ! ! +-----------------------5t5k_E +-9 ! ------------RA-- ! ! +------------------------6t7a_C -10 ! ----------IT---- ! +------------------------6r8y_H ! ------------RG-- +-------------------------7e9c_G |
> 7und_e:POL II-DSIF-SPT6-PAF1C-TFIIS-NUCLEOSOME COMPLEX (STALLED AT +38)
RG------ +----------------------6a5l_e ! RT--LARG +----9 +---------7unc_a ! ! +---------4 ------RT ! +--6 +---------7lyb_G ! ! RG--LC-- ! +-------------------8bvw_e ! RA--LTRC ! +--------------------------3kwq_E +-13 ! RA--LTRC ! ! ! +------6jm9_A ! ! ! +--3 ------RA ! ! ! ! ! +--7xsx_a ! ! ! ! +---2 ------RC ! ! ! +----------5 +--6qld_f ! +-12 ! ! RG----RG ! ! ! ! +7yqk_E ! ! +-7 +---------1 RG----RT +-14 ! ! ! +8g57_E ! ! ! +-8 ! RT----RG ! ! ! ! ! +--------------------7uv9_E ! ! ! +-10 ! RGYALCRT ! ! ! ! ! +---------------------8byq_e ! ! +-11 ! ----LT-- -15 ! ! +----------------------7ywx_E ! ! ! RG----RT ! ! +-----------------------8cww_A ! ! RA------ ! +-----------------------------6kxv_A ! ------RA +-----------------------------1kx5_G |
> 7uv9_E:KDM2A-NUCLEOSOME STRUCTURE STABILIZED BY H3K36C-UNC8015 COVALENT CONJUGATE
--------RT +8g57_E +----3 --------RA ! +7ea8_A +----5 ----LT--RC ! ! +5xm1_A ! ! +-1 --RG------ ! +----2 +6pww_K +-------------7 ! YA--LC---- ! ! +5mlu_A ! ! --RC------ ! ! +-------6fq8_A +-8 +--6 --------RA ! ! ! +--7xsx_a ! ! +----4 --------RC --9 ! +--6qld_f ! ! ------KT-- L ! +------------------------7cvo_A ! ----LT---- +--------------------------4z5t_A |
> 7ux9_A:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
------RA-- +--6t7a_C +-------------2 ------RA-- +---4 +--7xsx_a ! ! ------RT-- +--------6 +----------------7lyb_G ! ! ------RG-- +-9 +--------------------7e9c_G ! ! ------RG-- ! +-----------------------------5t5k_E ! --LT----RG ! +8eue_E ! +-------------1 ------RG-- -10 +----3 +7k6p_A ! ! ! --LT--RC-- ! +----5 +--------------5xm1_A ! ! ! ------RT-- ! +-7 +-------------------7wlr_E ! ! ! RAAANA---- +---8 +------------------------1jfi_B ! --IT------ +-------------------------6r8y_H |
> 7ux9_C:ARABIDOPSIS DDM1 BOUND TO NUCLEOSOME (H2A.W, H2B, H3.3, H4, WITH 147 BP DNA)
----IT------ +-------6r8y_H +---------------------3 --------RT-- ! ! +--7lyb_G +-7 +----2 --------RA-- ! ! +--7xsx_a +-8 ! --------RG-- ! ! +-----------------------------5t5k_E +-9 ! --------RA-- ! ! +-----------------------------6t7a_C ! ! --------RG-- ! +-----------------------------7e9c_G ! LT--------RG ! +8eue_E -10 +-------------1 --------RG-- ! +----4 +7k6p_A ! ! ! --------RT-- ! +----5 +--------------7wlr_E ! ! ! LT------RC-- +----6 +-------------------5xm1_A ! --RAAANA---- +------------------------1jfi_B |
> 7v5n_B:CRYSTAL STRUCTURE OF FAB FRAGMENT OF BEVACIZUMAB BOUND TO DNA APTAMER
TGTGNGYTNGWGNTTTYTTT--YGHGYTYTWG-- +-7v5n_B +-1 ------------------------------YA-- +---------------------2 +-3vw3_H ! ! ----SCYA--------YT---------------- --3 +--2fr4_B ! --------------------ST----------WG +------------------------7v5n_E |
> 7v94_A:CRYO-EM STRUCTURE OF THE CAS12C2-SGRNA-TARGET DNA TERNARY COMPLEX
----NGLGQGQTQA--ECNC-- L +-----------------------------7way_A +-1 --------------------AT L +-2 +-----------------------------6ny2_Y ! ! --------------SC------ --3 +-----------------------------7c7l_A ! LTRT------------------ L +-----------------------------7pla_A |
> 7vdt_B:THE MOTOR-NUCLEOSOME MODULE OF HUMAN CHROMATIN REMODELING PBAF- NUCLEOSOME COMPLEX
--RC +--6qld_f ! --RA +-----3 +7xsx_a ! ! +-1 LTRC ! +--2 +3kwq_E +---------4 ! LGRA L ! ! +8he5_a +-5 ! --RT ! ! +--------8siy_G +-6 ! LARG ! ! +------------------7unc_a +-7 ! LC-- ! ! +--------------------8bvw_e +-8 ! --RG ! ! +---------------------7uv9_E --9 ! --RT ! +----------------------8cww_A ! LT-- +-----------------------7ywx_E |
> 7vo0_N:STREPTOMYCES COELICOLOR ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA (TRIMER OF DIMERS)
RT----------TCTG--YTRT---- +-----------------------------7vpz_N +-1 --KGQG-------------------- +-2 +-----------------------------8h7a_A ! ! --------RA---------------- +-3 +-----------------------------8ity_P ! ! ------DT--RTRGTT--------KT L --4 +-----------------------------2o8k_A ! ----------RGTG--DTVT--RTRG L +-----------------------------8hml_B |
> 7vou_C:THE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN IN COMPLEX WITH DNA 1
----FGTTPTRTAT----LT-------- L +-----------------------------4hqe_A +-2 ------------QC--KGSG--RTRGRA L ! +-----------------------------3gz6_A +-3 KGQG------------------------ ! ! +-8h7a_A --4 +---------------------------1 --------TCTG--YTRT---------- ! +-7vpz_N ! ----DTRT----RGTT----KT------ L +-----------------------------2o8k_A |
> 7vpz_N:CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH ONE ZUR DIMER
RT--------------TCTGYTRT-------- +----------------7vpz_N +------1 --------------------NASTRTHT--ST L +-2 +----------------3l2c_A ! ! --LAHAKARA---------------------- +-3 +-----------------------6dta_A ! ! ----------VTSARGTA--RT---------- L --4 +-------------------------6za3_B ! ----------------------IA--KGNA-- L +--------------------------2hdd_A |
> 7wlr_B:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RC +--6qld_f +-----------4 LTRC ! ! +3kwq_E ! +--1 LGRA L +-5 +8he5_a ! ! --RA ! ! +7xsx_a +-----6 +--------------2 --RT ! ! +8cww_A ! ! LT-- +-7 ! +-7ywx_E ! ! +-------------3 --RT ! ! +-8siy_G +-8 ! LARG ! ! +---------------------7unc_a --9 ! LC-- ! +----------------------8bvw_e ! --RG +-----------------------7uv9_E |
> 7wlr_D:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RA +7xsx_a +-1 LT-- ! +7ywx_E +--3 LTRC ! ! +3kwq_E +---4 +-2 LGRA L ! ! +8he5_a +-------5 ! --RC ! ! +---6qld_f +-6 ! --RT ! ! +-------8siy_G +-7 ! LARG ! ! +---------------7unc_a +-8 ! LC-- ! ! +-----------------8bvw_e --9 ! --RT ! +-------------------8cww_A ! --RG +--------------------7uv9_E |
> 7wlr_E:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
RA----LTRC +-------6jm9_A +---4 --------RC ! +-------6qld_f +----6 RG------RG ! ! +7yqk_E +--7 +-----------1 RG------RT ! ! +8g57_E +-8 ! RGYA--LCRT ! ! +----------------8byq_e ! ! RG------RT +--10 +-------------------8cww_A ! ! ------LT-- ! ! +-----7ywx_E ! +--------------3 --------RA +-12 ! +-7xsx_a ! ! +---2 ----RG---- ! ! +-7k6p_D +-13 ! RT------RG ! ! +------------------------7uv9_E ! ! RA----LTRC ! +---------------------------3kwq_E +-14 RG----LC-- ! ! +---------8bvw_e ! ! +---------5 --------RT ! ! +--9 +---------7lyb_G +-15 ! ! ! RT----LARG ! ! +---11 +-------------------7unc_a ! ! ! RG-------- -16 ! +----------------------6a5l_e ! ! RA-------- ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 7wlr_G:CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING KOMAGATAELLA PASTORIS HISTONES
--RC +--6qld_f +----3 LTRC ! +--3kwq_E +----4 --RA ! ! +7xsx_a ! ! +-1 LT-- +--5 +------2 +7ywx_E ! ! ! LGRA L ! ! +8he5_a +-6 ! LARG ! ! +------------7unc_a +-7 ! LC-- ! ! +---------------8bvw_e +-8 ! --RG ! ! +-----------------7uv9_E --9 ! --RT ! +-------------------8cww_A ! --RT +--------------------8siy_G |
> 7wnh_D:CRYSTAL STRUCTURE OF NURR1 BINDING TO NBRE
CAECKG--KGRG--RTRT L +-------------------7wnh_D +-----2 CAECKG--KGRG--RTRA L ! +-------------------6l6q_B --3 --EC----RGRGRT---- ! +8hbm_B +-------------------------1 ----KGVG--RG------ L +5cbx_B |
> 7xcr_E:CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
HARA--LTRC +--------------------------3kwq_E ! --RA--LTRC ! +------6jm9_A ! +--3 --------RA ! ! ! +--7xsx_a ! ! +---2 --------RC ! +----5 +--6qld_f +-12 ! ! --RG----RG ! ! ! ! +7yqk_E ! ! +------6 +---------1 HTRG----RT ! ! ! ! +8g57_E ! ! +-8 ! --RG----RT ! ! ! ! +--------------8cww_A ! ! +-10 ! --RT----RG ! ! ! ! +---------------------7uv9_E ! +-11 ! --RGYALCRT +-13 ! +----------------------8byq_e ! ! ! ------LT-- ! ! +-----------------------7ywx_E ! ! --RG--LC-- ! ! +---------8bvw_e ! ! +---------4 --------RT +-14 ! +--7 +---------7lyb_G ! ! ! ! ! --RT--LARG ! ! +----9 +-------------------7unc_a ! ! ! --RG------ -15 ! +----------------------6a5l_e ! ! --RA------ ! +-----------------------------6kxv_A ! --------RA +-----------------------------1kx5_G |
> 7xcr_F:CRYO-EM STRUCTURE OF DOT1L AND H2BK34UB-H3K79NLE NUCLEOSOME 1:1 COMPLEX
------RC +---6qld_f +-----------------5 ------RA ! +---7xsx_a ! ------RT ! +8g57_E ! +---------3 RG------ +---8 ! +6pww_K ! ! +----6 RC------ ! ! ! ! +6fq8_A ! ! ! ! +-1 --LT--RC ! ! ! +---------2 +5xm1_A ! +-----7 ! ------RA --9 ! +7ea8_A ! ! --LC---- ! ! +5mlu_A ! +--------------4 --LT---- ! +4z5t_A ! ----KT-- L +-------------------------7cvo_A |
> 7xd0_F:CRYO-EM STRUCTURE OF H2BK34UB NUCLEOSOME
----RC +---6qld_f +-----------------3 ----RA ! +---7xsx_a ! LC---- ! +5mlu_A --7 +--------------1 LT---- ! ! +4z5t_A ! +----5 ----RT ! ! ! +8g57_E ! ! +--------------2 ----RA +-6 +7ea8_A ! LT--RC ! +---------5xm1_A +---------4 --KT-- L +---------7cvo_A |
> 7xjg_C:CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS EFFECTOR AT 2.5 ANGSTROM
--------------KT--RG--RGYA L +-----------------------------4l18_B +-1 --------------KT--RG--RGYA L +-2 +-----------------------------4lg0_B ! ! ------------DCKT--RGSTRGYC L +-3 +-----------------------------4uno_A ! ! FGNA--TTQGKGIG--VT-------- L +-4 +-----------------------------7bzg_B ! ! --------------KT--RGATRGYA L +-5 +-----------------------------1bc8_C ! ! ------------QC------------ --6 +-----------------------------5hso_A ! ----FG--TTPTRTAT--LT------ L +-----------------------------4hqe_A |
> 7xsx_a:RNA POLYMERASE II ELONGATION COMPLEX TRANSCRIBING A NUCLEOSOME (EC49)
--LTRC +3kwq_E +-------------------------1 --LGRA L ! +8he5_a ! --LT-- ! +-7ywx_E ! +--------3 ----RT ! ! +-8cww_A ! +----5 ----RA +-9 ! ! +7xsx_a ! ! ! +---------2 ----RT ! ! +-6 +8siy_G ! ! ! ! RG---- ! ! ! ! +------7k6p_D ! ! +----7 +--------4 ----RC -10 ! ! ! +------6qld_f ! +--8 ! ----RG ! ! +-----------------7uv9_E ! ! --LC-- ! +----------------------8bvw_e ! --LARG +---------------------------7unc_a |
> 7xv6_B:CRYSTAL STRUCTURE OF THE HUMAN TR4 DNA-BINDING DOMAIN WITH C-TERMINAL EXTENSION (DBD-CTE) HOMODIMER BOUND TO DR1 RESPONSE ELEMENT
--DAKG--RGRG-- L +-----------------------------4iqr_B +-2 ----KGVG--RG-- L +-3 +-----------------------------5cbx_B ! ! CAECKG--KGRG-- L --4 +-----------------------------6l6q_B ! --EC----RGRGRT ! +8hbm_B +----------------------------1 CAECKG--KGRG-- L +7wnh_D |
> 7y7i_E:CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME
--RT----LARG +---------7unc_a +---------5 ----------RT +--7 +---------7lyb_G ! ! --RG----LC-- +----9 +-------------------8bvw_e ! ! --RG-------- ! +----------------------6a5l_e ! --RA----LTRC ! +6jm9_A ! +-------1 HTRG------RT ! +----------4 +8g57_E ! ! ! ----------RC ! ! +-------6qld_f ! +--6 --------LT-- ! ! ! +-----7ywx_E +-14 ! +------------3 ----------RA ! ! +-8 ! +-7xsx_a ! ! ! ! +---2 ------RG---- ! ! ! ! +-7k6p_D ! ! +-10 ! --RT------RG ! ! ! ! +---------------------7uv9_E ! ! +-11 ! --RGYA--LCRT +-15 ! ! ! +----------------------8byq_e ! ! ! +-12 ! --RG------RG ! ! ! ! ! +-----------------------7yqk_E ! ! +-13 ! --RG------RT ! ! ! +------------------------8cww_A -16 ! ! HARA----LTRC ! ! +---------------------------3kwq_E ! ! --RA-------- ! +-----------------------------6kxv_A ! ----------RA +-----------------------------1kx5_G |
> 7yqk_E:CRYO-EM STRUCTURE OF GAMMAH2AXK15UB-H4K20ME2 NUCLEOSOME BOUND TO 53BP1
HTRG------RT +8g57_E +-------2 --RT--RG---- ! +6pww_K +------6 HTRA----LTRC ! ! +5xm1_A ! +-------1 --RA----LT-- +-8 +4z5t_A ! ! --RGYA--LC-- ! ! +5mlu_A ! +-------------4 --RG--RC---- --9 ! +6fq8_A ! +-3 --RG-------- ! +6y5d_Q ! --RT------RA ! +-------7ea8_A +-------7 ----------RA ! +--7xsx_a +----5 ----------RC +--6qld_f |
> 7yrd_A:HISTONE METHYLTRANSFERASE
--RA----LT----RG +8eue_E ! HGRTYT------RG-- +---------3 +7k6p_A ! ! +-1 --RT--RG-------- ! +-2 +6pww_K +----------6 ! HTRA----LT--RC-- ! ! +5xm1_A ! ! --RGYA------RT-- ! ! +-----7wlr_E +--7 +----4 ------------RA-- ! ! +-----7xsx_a ! ! ----------IT---- +-8 ! +--------6r8y_H ! ! +------------5 ------------RT-- ! ! +--------7lyb_G +-9 ! ------------RG-- ! ! +------------------------5t5k_E -10 ! ------------RA-- ! +------------------------6t7a_C ! ------------RG-- +-------------------------7e9c_G |
> 7yrd_C:HISTONE METHYLTRANSFERASE
------RA-- +--6t7a_C +-------------2 ------RA-- +---4 +--7xsx_a ! ! ------RT-- +--------6 +----------------7lyb_G ! ! ------RG-- +-8 +--------------------7e9c_G ! ! --IT------ +-9 +-----------------------------6r8y_H ! ! ------RG-- ! +-----------------------------5t5k_E ! --------RG ! +8eue_E -10 +-------------1 ------RG-- ! +----3 +7k6p_A ! ! ! --LT--RC-- ! +----5 +--------------5xm1_A ! ! ! ------RT-- +----7 +-------------------7wlr_E ! RAAANA---- +------------------------1jfi_B |
> 7ywx_E:STRUCTURE OF THE HUMAN CCAN CENP-A ALPHA-SATELLITE COMPLEX
--LT-- +-7ywx_E +------------2 --LC-- ! +-8bvw_e +-5 ----RA ! ! +-7xsx_a ! ! +--3 RG---- +--7 +---------4 +-7k6p_D ! ! ! ----RC ! ! +----6qld_f +----8 ! ----RG ! ! +--------------7uv9_E +-9 ! ----RT ! ! +-----------------8cww_A ! ! --LARG ! +----------------------7unc_a -10 --LTRC ! +3kwq_E ! +--------------1 --LGRA L +--------6 +8he5_a ! ----RT +--------------8siy_G |
> 7zs9_e:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH THE +1 NUCLEOSOME (COMPLEX A)
HGRTYT----------RG-- +7k6p_A +-1 --RT--RG------------ +-----2 +6pww_K ! ! HTRA------LT----RC-- +----------4 +5xm1_A ! ! ----------------RA-- ! +-----7xsx_a +----7 --RA------LT------RG ! ! +8eue_E ! ! +--------3 --RGYA----------RT-- ! +------6 +7wlr_E +-8 ! ----------------RT-- ! ! +---------7lyb_G ! ! --------RAAA--NA---- +-9 ! +--------1jfi_B ! ! +------------5 ------------IT------ ! ! +--------6r8y_H +-10 ! ----------------RG-- ! ! +----------------------5t5k_E -11 ! ----------------RA-- ! +-----------------------6t7a_C ! ----------------RG-- +------------------------7e9c_G |
> 8aag_A:H1-BOUND PALINDROMIC NUCLEOSOME, STATE 1
--RA----LT---- +-----------------------------4z5t_A ! --RGYA--LC---- ! +5mlu_A ! ! HTRA----LT--RC ! +-------3 +5xm1_A ! ! ! +-1 HTRG--------RT ! ! +-2 +8g57_E ! +-6 ! --RT--RG------ -10 ! ! +6pww_K ! ! ! --RT--------RA ! +--7 +-------7ea8_A ! ! ! ------------RA ! ! ! +--7xsx_a ! +------------8 +------5 ------------RC ! ! ! +--6qld_f ! ! ! --RG--RC------ +---9 ! +6fq8_A ! +-----------4 --RG---------- ! +6y5d_Q ! ----------KT-- L +-------------------------7cvo_A |
> 8atf_Q:NUCLEOSOME-BOUND INO80 ATPASE
HTRG--------RT +8g57_E +-------2 --RT--RG------ ! +6pww_K +------7 HTRA----LT--RC ! ! +5xm1_A ! +-------1 --RA----LT---- ! +4z5t_A ! --RGYA--LC---- +----------9 +5mlu_A ! ! +-----4 --RT--------RA ! ! ! +7ea8_A ! ! +------6 ------------RA ! ! ! ! +--7xsx_a ! ! ! +---5 ------------RC -10 +-8 +--6qld_f ! ! --RG--RC------ ! ! +6fq8_A ! +------------3 --RG---------- ! +6y5d_Q ! ----------KT-- L +-------------------------7cvo_A |
> 8b4b_W:TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 19 BP OMPU PROMOTER DNA
--------NTVCECSTYTSTYC--RA L +-----------------------------5ed4_A +-1 --------RGTCDCVA--RGRC--RC L +-2 +-----------------------------8hih_Q ! ! ----ST--------NASTRTHT---- L +-3 +-----------------------------3l2c_A ! ! --------------NASTRGHTST-- L +-4 +-----------------------------2c6y_A ! ! LTETTTRAECRCRCQC---------- L --5 +-----------------------------3n97_A ! --------------IA--KGNA---- L +-----------------------------2hdd_A |
> 8bvw_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE DISTAL +1 NUCLEOSOME (PIC-NUC18W)
--RA------LT------RG +8eue_E ! --RT--RG------------ +---------3 +6pww_K ! ! +-1 HGRTYT----------RG-- ! +-2 +7k6p_A +--------6 ! HTRA------LT----RC-- ! ! +5xm1_A ! ! --RGYA----------RT-- +--7 ! +-----7wlr_E ! ! +----4 ----------------RA-- ! ! +-----7xsx_a ! ! ----------------RT-- +-9 +-------------------7lyb_G ! ! --------RAAA--NA---- ! ! +--------1jfi_B ! ! +------------5 ------------IT------ +-10 +-8 +--------6r8y_H ! ! ! ----------------RG-- ! ! +---------------------5t5k_E -11 ! ----------------RA-- ! +-----------------------6t7a_C ! ----------------RG-- +------------------------7e9c_G |
> 8byq_e:RNA POLYMERASE II PRE-INITIATION COMPLEX WITH THE PROXIMAL +1 NUCLEOSOME (PIC-NUC10W)
--RT--RG------ +6pww_K +-------------1 HTRA----LT--RC ! +5xm1_A ! HTRG--------RT ! +8g57_E +-----------8 +-------2 --RT--------RA ! ! ! +7ea8_A ! ! +----6 ------------RA ! ! ! ! +--7xsx_a ! ! ! +----5 ------------RC ! +-7 +--6qld_f +-9 ! --RGYA--LC---- ! ! ! +5mlu_A ! ! +-----------4 --RG--RC------ ! ! ! +6fq8_A -10 ! +-3 --RG---------- ! ! +6y5d_Q ! ! ----------KT-- L ! +-------------------------7cvo_A ! --RA----LT---- +--------------------------4z5t_A |
> 8c7s_A:TRANSCRIPTIONAL PLEIOTROPIC REPRESSOR CODY FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ILE, GTP, AND A 30-BP DNA FRAGMENT ENCOMPASSING TWO OVERLAPPING BINDING SITES
--------YG----------TG--RGSG--FT-- L +-----------------------------2h27_A +-1 NTATATRG-------------------------- L +-2 +-----------------------------5t01_B ! ! ----------SGQG--YCNC-------------- +-3 +-----------------------------2ve9_C ! ! --------------ITRGECSC--SGKG------ L --4 +-----------------------------5i2d_R ! ----------------RGTC--DCVA--RGRCRC L +-----------------------------8hih_Q |
> 8c7u_A:TRANSCRIPTIONAL PLEIOTROPIC REPRESSOR CODY FROM ENTEROCOCCUS FAECALIS IN COMPLEX WITH LEU AND A 30-BP DNA FRAGMENT ENCOMPASSING TWO OVERLAPPING BINDING SITES
> 8cef_H:ASYMMETRIC DIMERIZATION IN A TRANSCRIPTION FACTOR SUPERFAMILY IS PROMOTED BY ALLOSTERIC INTERACTIONS WITH DNA
CAECKG--KGRG----RTRA L +-----------------------------6l6q_B ! CAECKG--KGRG----RTRT L --4 +---------------------7wnh_D ! +-----2 ----KGVG--RG-------- L ! ! +---------------------5cbx_B +-3 --EC----RGRGRT------ ! +8hbm_B +--------------------------1 --DAKG--RGRG--RT---- L +4iqr_B |
> 8ceo_r:YEAST RNA POLYMERASE II TRANSCRIPTION PRE-INITIATION COMPLEX WITH CORE MEDIATOR AND THE +1 NUCLEOSOME
HTRA----LTRC +5xm1_A +-------------1 --RT--RG---- ! +6pww_K ! HTRG------RT ! +8g57_E ! +-2 --RT------RA +--------8 +-----4 +7ea8_A ! ! ! ! --RGYA--LC-- ! ! +---6 +5mlu_A ! ! ! ! ----------RA ! ! ! ! +--7xsx_a ! +--7 +---5 ----------RC --9 ! +--6qld_f ! ! --RG--RC---- ! ! +6fq8_A ! +----------3 --RG-------- ! +6y5d_Q ! --RA----LT-- +----------------------4z5t_A |
> 8com_A:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--LT--RC-- +-----------------5xm1_A +----4 ------RT-- ! ! +-----7wlr_E +---7 +-----------2 ------RA-- ! ! +-----7xsx_a ! ! ------RT-- ! +----------------------7lyb_G ! --LT----RG ! +8eue_E ! +-------------------1 ------RG-- -10 +--5 +7k6p_A ! ! ! ------RG-- ! ! +-------------------5t5k_E ! +-8 RAAANA---- ! ! ! +--------1jfi_B ! ! ! +-------------3 --IT------ +--9 +-6 +--------6r8y_H ! ! ------RG-- ! +----------------------7e9c_G ! ------RA-- +-----------------------6t7a_C |
> 8com_B:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--------RA-- +--6t7a_C +-------------3 --------RA-- +---5 +--7xsx_a ! ! --------RG-- +--8 +----------------7e9c_G ! ! --------RT-- +-9 +--------------------7lyb_G ! ! --------RG-- ! ! +7k6p_A ! +----------------------1 --LT----RC-- ! +5xm1_A ! RAAA--NA---- -10 +--------1jfi_B ! +-------4 ----IT------ ! ! +--------6r8y_H ! +---6 --LT------RG ! ! ! +8eue_E +---7 +---------------2 --------RT-- ! +7wlr_E ! --------RG-- +--------------------5t5k_E |
> 8com_C:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
--------RG-- +--7e9c_G +-------------3 --------RA-- +---4 +--7xsx_a ! ! --------RT-- +--6 +----------------7lyb_G ! ! --------RA-- +-----7 +--------------------6t7a_C ! ! ----IT------ +-9 +-----------------------6r8y_H ! ! RC---------- +-10 +-----------------------------6uph_D ! ! --------RG-- ! +-----------------------------5t5k_E ! ----------RG -11 +8eue_E ! +------------------2 --------RG-- ! ! ! +7k6p_A ! +----5 +-1 ----LT--RC-- ! ! ! +5xm1_A +----8 ! --------RT-- ! +-------------------7wlr_E ! --RAAANA---- +------------------------1jfi_B |
> 8com_H:STRUCTURE OF THE NUCLEOSOME CORE PARTICLE FROM TRYPANOSOMA BRUCEI
RC------------ +------6uph_D +------------4 ----------RT-- +-----7 +------7lyb_G ! ! RG----IT------ ! +-------------------6r8y_H ! ----RAAANA---- +-10 +-------------1jfi_B ! ! +--------5 ----------RG-- ! ! ! +-------------5t5k_E ! +--9 ----------RA-- ! ! +--6t7a_C ! ! +-------------3 ----------RA-- -11 +-----6 +--7xsx_a ! ! ----------RG-- ! +----------------7e9c_G ! --LT--------RG ! +8eue_E ! +-------------------2 ----------RG-- ! ! ! +7k6p_A +-------8 +-1 --LT------RC-- ! +5xm1_A ! ----------RT-- +--------------------7wlr_E |
> 8cww_A:STRUCTURE OF S. CEREVISIAE HOP1 CBR BOUND TO A NUCLEOSOME
HTRA----LT--RC +5xm1_A +-1 HTRG--------RT +---------2 +8g57_E ! ! --RT--RG------ +----7 +6pww_K ! ! --RA----LT---- +-8 +---------4z5t_A ! ! --RGYA--LC---- ! ! +5mlu_A ! +-------------4 --RG--RC------ ! ! +6fq8_A +---------9 +-3 --RG---------- ! ! +6y5d_Q ! ! --RT--------RA ! ! +-------7ea8_A -10 +-------6 ------------RA ! ! +--7xsx_a ! +----5 ------------RC ! +--6qld_f ! ----------KT-- L +-------------------------7cvo_A |
> 8d0b_A:HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE
------------------------------------------------------------------------------------------------------------------------------RT---------------------------------- +-----------------------------4l5r_C ! ------------------------------------------------RTFTNT--RT----------------------------------------------TT------------------KT----FT----STFTST-------------------- L +-6 +----------------------4gnx_Z ! ! +----2 --------------------------------------------------------------------TTKT----------TTATNTTTFTAT--FT--NT------------------------------------------------------------ L ! ! ! +----------------------6bhx_B ! +-5 ------------------------------------------------------------------------STTTDT--------------------QC--HC--FA--KT------------TG--RA--YCQCLGKGDGQG------------------ L ! ! +------1qzh_E +-7 ! +-----------------1 KGFGSTTTDTTGTGLAFAQGQGIA------------------------------------------------------------------------------------------------------------------------------------------ L ! ! +--4 +------3kjp_A ! ! ! --------------------------------------------------------------RT--KT--------------AT--------TT--WT--RT----------RT--IT--YT--------------------NTNTMTQTLT---------- L +-8 ! +------------------------6irq_A ! ! ! --------------------------------------------------------------------------------------------------------------------------------------------------------MGRGMGFGDG ! ! +-----------------------------7lma_D +-9 ! ----------------------------------------------------------EG------YG------------------------------------------------------EG--------------NG--HG------------------ ! ! +-----------------------------3u58_C ! ! ------------------------------------------------------------KG---------------------------------------------------------------------------------------------------- L +-10 +-----------------------------4jbm_A ! ! ------------------------------------------------------RC---------------------------------------------------------------------------------------------------------- ! ! +-----------------------5z7d_C +-11 +-----3 KGFGSTTTDTTGTGLAFTQGQGIA------------------------------------------------------------------------------------------------------------------------------------------ L ! ! +-----------------------7qxs_P -12 ! ----------------------------------------------------------------VC------RC----VCNC----------TCECWC--RC------FC--KCECVCECYC----------------NCVC--TC--QC------------ L ! +-----------------------------1eyg_D ! ------------------------RTIGWGDGKGDTHTLTYAEGIGHG------------------------------------------------------------------------------------------------------------------ L +-----------------------------4hja_A |
> 8ee9_F:HUMAN PU.1 ETS-DOMAIN (165-270) BOUND TO D(AATAAAAGGAATGGGG)
--KT--RG----RGYA------ L +-4l18_B +------1 --KT--RG----RGYT------ L +--------------------2 +-4bqa_A ! ! ECKT--RGAT--RGHT----RA L --3 +--------4mhg_A ! ----NAST--RGHT--STLT-- L +-----------------------------2c6y_A |
> 8etv_A:CLASS2 OF THE INO80-HEXASOME COMPLEX
--LT----RC-- +-----5xm1_A +-----------------------2 --------RA-- ! +-----7xsx_a ! --LT------RG ! +8eue_E ! +-------------1 --------RG-- ! +----5 +7k6p_A ! ! ! --------RT-- -10 +----6 +--------------7wlr_E ! ! ! ------IT---- ! ! ! +--------6r8y_H ! ! +----------3 --------RT-- ! +-8 +--------7lyb_G ! ! ! RAAANA------ ! ! ! +-------------1jfi_B ! ! ! +--------4 --------RG-- +---9 +-7 +-------------5t5k_E ! ! --------RG-- ! +----------------------7e9c_G ! --------RA-- +-------------------------6t7a_C |
> 8eue_E:CLASS1 OF THE INO80-NUCLEOSOME COMPLEX
--RA------LT------RG +8eue_E ! --RT--RG------------ +---------3 +6pww_K ! ! +-1 HGRTYT----------RG-- ! +-2 +7k6p_A +-----------6 ! HTRA------LT----RC-- ! ! +5xm1_A ! ! --RGYA----------RT-- ! ! +----7wlr_E ! +----4 ----------------RA-- +-8 +----7xsx_a ! ! --------RAAANA------ ! ! +-------1jfi_B ! ! +---5 --------------IT---- +-9 +---------7 +-------6r8y_H ! ! ! ----------------RT-- ! ! +-----------7lyb_G +-10 ! ----------------RA-- ! ! +-----------------------6t7a_C -11 ! ----------------RG-- ! +-----------------------7e9c_G ! ----------------RG-- +-------------------------5t5k_E |
> 8euj_f:CLASS2 OF THE INO80-NUCLEOSOME COMPLEX
------LT------RG +8eue_E +-------2 YT----------RG-- ! +7k6p_A +-----4 ------LT----RC-- ! ! +5xm1_A ! +-------1 --RG------------ +-------7 +6pww_K ! ! YA----------RT-- ! ! +----7wlr_E ! +--------3 ------------RA-- +-8 +----7xsx_a ! ! ----RA--AANA---- ! ! +-------1jfi_B ! ! +---5 --------IT------ +-9 +---------6 +-------6r8y_H ! ! ! ------------RT-- ! ! +-----------7lyb_G +-10 ! ------------RA-- ! ! +-----------------------6t7a_C -11 ! ------------RG-- ! +-----------------------7e9c_G ! ------------RG-- +-------------------------5t5k_E |
> 8g57_E:STRUCTURE OF NUCLEOSOME-BOUND SIRTUIN 6 DEACETYLASE
HTRG------RT +8g57_E +------2 --RT--RG---- ! +6pww_K +-------6 HTRA----LTRC ! ! +5xm1_A ! +-------1 --RA----LT-- +-8 +4z5t_A ! ! --RGYA--LC-- ! ! +5mlu_A ! +--------------4 --RG--RC---- --9 ! +6fq8_A ! +-3 --RG-------- ! +6y5d_Q ! --RT------RA ! +-------7ea8_A +---------7 ----------RA ! +--7xsx_a +----5 ----------RC +--6qld_f |
> 8grq_H:CRYO-EM STRUCTURE OF BRCA1/BARD1 BOUND TO H2AK127-UBCH5C-UB NUCLEOSOME
RG------ +-----------------------------7k63_H +-7 RG------ ! +-----------------------------3x1t_H +-8 ------RC ! ! +---6qld_f ! +-------------------------4 ------RA ! +---7xsx_a ! --LC---- --9 +5mlu_A ! +--------------3 --LT---- ! ! +4z5t_A ! +------5 --LT--RC ! ! ! +5xm1_A ! ! ! +-1 ------RT +-------6 +--------------2 +8g57_E ! ! ------RA ! +7ea8_A ! ----KT-- L +---------------------7cvo_A |
> 8gxq_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN MH-BINDING STATE
RG---- +-----------------------7k6p_D ! ----RC ! +--6qld_f ! +-----2 ----RC ! ! +--3kwq_E ! +------3 ----RA --8 ! ! +7xsx_a ! +--4 +--------1 ----RG ! ! ! +7uv9_E ! +-5 ! ----RA L ! ! ! +---------------8he5_a ! +-6 ! --LARG ! ! ! +------------------7unc_a +-7 ! ----RT ! +--------------------8cww_A ! ----RT +---------------------8siy_G |
> 8gxs_D:PIC-MEDIATOR IN COMPLEX WITH +1 NUCLEOSOME (T40N) IN H-BINDING STATE
RG---- +-----------------------7k6p_D ! ----RC ! +--6qld_f ! +---------2 --LGRA L ! ! +--8he5_a ! +---3 ----RA --8 ! ! +7xsx_a ! +--4 +------------1 ----RC ! ! ! +3kwq_E ! +-5 ! --LARG ! ! ! +----------------7unc_a ! +-6 ! ----RG ! ! ! +-------------------7uv9_E +-7 ! ----RT ! +---------------------8siy_G ! ----RT +----------------------8cww_A |
> 8h0v_h:RNA POLYMERASE II TRANSCRIBING A CHROMATOSOME (TYPE I)
RG------ +7k6p_D +-------------------------2 RG------ ! +3x1t_H +---9 --LT--RC ! ! +--------------6jm9_A ! +----------5 ------RG +-10 ! +7yqk_E ! ! +--------------1 ------RT ! ! +8g57_E ! ! ------RA ! +-----------------------------1kx5_G ! ------RT +-11 +----7lyb_G ! ! +-----------4 ----LTRC ! ! ! +----3kwq_E ! ! +--7 ------RT ! ! ! ! +--1u35_G ! ! ! ! +-------------3 ------RG +-12 +---------8 +-6 +--7uv9_E ! ! ! ! ----LC-- ! ! ! +----------------8bvw_e ! ! ! ------RT -13 ! +-------------------8cww_A ! ! ------RT ! +-----------------------------7zs9_e ! --LC--RT +-----------------------------8byq_e |
> 8hbm_B:STRUCTURAL BASIS OF THE FARNESOID X RECEPTOR/RETINOID X RECEPTOR HETERODIMER ON INVERTED REPEAT DNA
----KGVG--RG-- L +-----------------------------5cbx_B ! --EC----RGRGRT ! +8hbm_B --4 +--------------1 --DAKG--RGRG-- L ! +---2 +4iqr_B ! ! ! CAECKG--KGRG-- L +---------3 +---------------6l6q_B ! CAECKG--KGRG-- L +-------------------7wnh_D |
> 8he5_a:RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH RAD26 AND ELF1, STALLED AT SHL(-3.5) OF THE NUCLEOSOME
--RA------LT------RG +8eue_E ! --RT--RG------------ +-------------3 +6pww_K ! ! +-1 HGRTYT----------RG-- ! +-2 +7k6p_A +-----7 ! HTRA------LT----RC-- ! ! +5xm1_A ! ! --RGYA----------RT-- ! ! +-------7wlr_E ! +-----5 ----------------RT-- +-8 ! +--7lyb_G ! ! +----4 ----------------RA-- ! ! +--7xsx_a ! ! --------RAAA--NA---- +-9 ! +-------1jfi_B ! ! +-----------6 ------------IT------ ! ! +-------6r8y_H +--10 ! ----------------RA-- ! ! +--------------------6t7a_C -11 ! ----------------RG-- ! +---------------------7e9c_G ! ----------------RG-- +-------------------------5t5k_E |
> 8hr1_F:CRYO-EM STRUCTURE OF SSX1 BOUND TO THE UNMODIFIED NUCLEOSOME AT A RESOLUTION OF 3.02 ANGSTROM
RAAANA---- +-------1jfi_B +--------4 IT-------- ! +-------6r8y_H +--6 --LT----RG ! ! +8eue_E ! +---------------2 ------RT-- +-7 +7wlr_E ! ! ------RG-- ! ! +--7e9c_G ! ! +------------3 ------RA-- +--8 +---5 +--7xsx_a ! ! ! ------RA-- ! ! +---------------6t7a_C +-9 ! ------RT-- ! ! +--------------------7lyb_G ! ! ------RG-- -10 ! +7k6p_A ! +-----------------------1 --LT--RC-- ! +5xm1_A ! ------RG-- +-------------------------5t5k_E |
> 8siy_G:ORIGIN RECOGNITION COMPLEX ASSOCIATED (ORCA) PROTEIN BOUND TO H4K20ME3-NUCLEOSOME
HGRTYT------RG-- +7k6p_A +-1 --RT--RG-------- +-----2 +6pww_K ! ! HTRA----LT--RC-- +----------4 +5xm1_A ! ! ------------RA-- ! +-----7xsx_a +------6 --RA----LT----RG ! ! +8eue_E ! ! +--------3 --RGYA------RT-- +-7 +------5 +7wlr_E ! ! ! ------------RT-- ! ! +---------7lyb_G +-8 ! ------------RG-- ! ! +-----------------------5t5k_E +-9 ! ------------RA-- ! ! +------------------------6t7a_C -10 ! ----------IT---- ! +------------------------6r8y_H ! ------------RG-- +-------------------------7e9c_G |
> 8t9f_F:CATALYTIC AND NON-CATALYTIC MECHANISMS OF HISTONE H4 LYSINE 20 METHYLTRANSFERASE SUV420H1
RAAA--NA---- +-------1jfi_B +------------4 ----IT------ ! +-------6r8y_H ! --LT------RG +--8 +8eue_E ! ! +-------------------2 --------RG-- ! ! ! ! +7k6p_A ! +-6 +-1 --LT----RC-- +-9 ! +5xm1_A ! ! ! --------RT-- ! ! +-------------------7wlr_E ! ! --------RG-- ! +-----------------------5t5k_E -10 --------RG-- ! +--7e9c_G ! +------------3 --------RA-- ! +----5 +--7xsx_a ! ! ! --------RA-- +---7 +---------------6t7a_C ! --------RT-- +--------------------7lyb_G |