Welcome,
these folders contain datasets used in the paper describing pan-genome analyses
in plants, described in detail in:

Contreras-Moreira B, Cantalapiedra CP, García-Pereira M, Gordon SP, Vogel JP,
 Igartua E, Casas AM, Vinuesa P (2017) Analysis of plant pan-genomes and
transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of
the same species. Front. Plant Sci. 8:184. doi: 10.3389/fpls.2017.00184

http://journal.frontiersin.org/article/10.3389/fpls.2017.00184

A copy of these data can also be found at:

https://github.com/eead-csic-compbio/get_homologues/releases/tag/v1.0

1) Athaliana/

Contains original locations of genome-based CDS sets.

2) Athaliana_denovo/

Contains FASTA files with nucleotide sequences of de-novo assembled transcripts.

3) barley_transcripts/

Contains FASTA files with nucleotide sequences of 14 de-novo assembled transcriptomes 
and transcripts/cDNA sequences annotated in reference accessions Morex and Haruna Nijo.

4) suppl_scripts/

Contains a protocols and scripts used to generate results and plots in the paper, 
such as dN/dS (omega) estimates. See also: 
https://github.com/eead-csic-compbio/get_homologues/tree/master/user_utils/dNdS
 
5) Please refer to the main publication describing this work for further details.

Thanks
B Contreras-Moreira, CP Cantalapiedra, MJ Garcia-Pereira, SP Gordon, JP Vogel, 
E Igartua, AM Casas, P Vinuesa