Transcription Factor

						

			
Accessions: T057670_1.02 (CISBP 1.02)

			
Names: her, T057670_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 487
Pfam Domains:     21-45 C2H2-type zinc finger
    21-45 C2H2-type zinc-finger domain
    56-78 C2H2-type zinc-finger domain
  130-153 C2H2-type zinc-finger domain
Sequence: 
(in bold interface residues)		   1 MLSADRDSVEEEYGSCSAWKFRCSVDRCPYRTNRPYNLARHEESHIGITQSKLYGCPVCV   60
  61 YNTDKASNLKRHVSIKHPGCKKRPPEAQHKDRNAKLQCLVMGCRYETNRPYDLKRHLMVH  120
 121 NNPEKSHRTFKCSLCTYSSDRKANLKRHHELRHSGIEEAIQTAEELRQEMLLEKQMLKEH  180
 181 KLKYQITEKQDLKNLKLKDQKQKVQMLRDQQPKQRQKKEQLLEDQSPVLNKQLEHGNIPL  240
 241 KEALVGSMKYDEESLEFVYEELQEEEQPPIITISNPQILHGDIRDKHVIAVNVDGQLRWF  300
 301 QSIDPPPGAPTKLELPIKSTSISVQQQMDELDDELAMSLAEEDQQDEFLVPMLSGEEPVK  360
 361 IKQSSLTDLAWSWSTPDAVHHISPKAELKKDLKAGDADTDFPDWWDDGKYTKMQKNQTFA  420
 421 KHSKKPSQENVQRILRIIYDIYYKPFKEDRKQFEAFQIKDSWLCATRMTRMQIIKDMYSK  480
 481 QGTLSQT
Interface Residues: 33, 34, 35, 36, 37, 39, 40, 64, 65, 66, 67, 68, 70, 71, 86, 88, 89, 92, 100, 101, 106, 107, 109, 110, 111, 112, 113, 115, 116, 119, 137, 140, 141, 142, 143, 144, 146, 147, 164, 167, 168, 171, 174, 188, 189, 190, 191, 195, 198, 236
3D-footprint Homologues: 7ysf_A, 1llm_D, 2drp_D, 6blw_A, 5kl3_A, 1f2i_J, 4x9j_A, 1ubd_C, 7w1m_H, 2jpa_A, 1g2f_F, 6wmi_A, 5k5i_A, 1mey_C, 2i13_A, 7eyi_G, 7n5w_A, 5kkq_D, 8ssq_A, 8ssu_A, 1yuj_A, 3uk3_C, 2wbs_A, 8gn3_A, 5und_A, 7y3m_I, 6u9q_A, 8cuc_F, 7y3l_A, 5yj3_D
Binding Motifs: M5003_1.02 rCGsawwwrTGAGya
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.