Transcription Factor
| Accessions: | Q8W2F3 (JASPAR 2024) |
| Names: | AtbHLH9, Basic helix-loop-helix protein 9, bHLH 9, bHLH transcription factor bHLH009, Phytochrome-interacting factor 4, PIF4_ARATH, Short under red-light 2, Transcription factor EN 102, Transcription factor PIF4 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q8W2F3 |
| Length: | 430 |
| Pfam Domains: | 261-307 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEHQGWSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQTQTQKQDHHEEAL 60 61 RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDPLQRPTSETVKPKSSPEPPQVM 120 121 VKPKACPDPPPQVMPPPKFRLTNSSSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMS 180 181 HDRSKNIEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSD 240 241 AIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAI 300 301 DYLKSLQLQLQVMWMGSGMAAAAASAPMMFPGVQPQQFIRQIQSPVQLPRFPVMDQSAIQ 360 361 NNPGLVCQNPVQNQIISDRFARYIGGFPHMQAATQMQPMEMLRFSSPAGQQSQQPSSVPT 420 421 KTTDGSRLDH |
| Interface Residues: | 39, 40, 41, 44, 45, 262, 263, 265, 266, 269, 270, 290, 292 |
| 3D-footprint Homologues: | 2p5l_D, 7d8t_A, 5i50_B, 5v0l_A, 4zpk_A, 1a0a_B, 7f2f_B, 5eyo_A, 1am9_A, 7ssa_L, 5nj8_D, 4h10_A, 6g1l_A, 5gnj_I, 7xi3_A, 4h10_B, 2ql2_D, 8osl_P, 8osl_O, 1an4_A, 5sy7_B, 5nj8_C, 5v0l_B |
| Binding Motifs: | MA0561.1 CACGTGsc |
| Binding Sites: | MA0561.1.1 MA0561.1.10 MA0561.1.11 MA0561.1.12 MA0561.1.13 MA0561.1.14 MA0561.1.15 MA0561.1.16 MA0561.1.17 MA0561.1.18 MA0561.1.19 MA0561.1.2 MA0561.1.20 MA0561.1.3 MA0561.1.4 MA0561.1.5 MA0561.1.6 MA0561.1.7 MA0561.1.8 MA0561.1.9 |
| Publications: | Hornitschek P, Kohnen M.V, Lorrain S, Rougemont J, Ljung K, López-Vidriero I, Franco-Zorrilla J.M, Solano R, Trevisan M, Pradervand S, Xenarios I, Fankhauser C. Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. The Plant journal : for cell and molecular biology 71:699-711 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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