Transcription Factor
| Accessions: | SPL1 (ArabidopsisPBM 20140210), Q9SMX9 (JASPAR 2024), T07143 (AthalianaCistrome v4_May2016) |
| Names: | SPL1, SPL1_ARATH, AT2G47070, T07143; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | SBP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:SBP |
| Length: | 881 |
| Pfam Domains: | 105-182 SBP domain |
| Sequence: (in bold interface residues) | 1 MEARIDEGGEAQQFYGSVGKRSVEWDLNDWKWDGDLFLATQTTRGRQFFPLGNSSNSSSS 60 61 CSDEGNDKKRRAVAIQGDTNGALTLNLNGESDGLFPAKKTKSGAVCQVENCEADLSKVKD 120 121 YHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKT 180 181 NPEPGANGNPSDDHSSNYLLITLLKILSNMHNHTGDQDLMSHLLKSLVSHAGEQLGKNLV 240 241 ELLLQGGGSQGSLNIGNSALLGIEQAPQEELKQFSARQDGTATENRSEKQVKMNDFDLND 300 301 IYIDSDDTDVERSPPPTNPATSSLDYPSWIHQSSPPQTSRNSDSASDQSPSSSSEDAQMR 360 361 TGRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEEL 420 421 SDDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISV 480 481 KPLAIAATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVE 540 541 CVNFSCDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFTGTDSAKQ 600 601 AMDFIHEIGWLLHRSKLGESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDGAV 660 661 GEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPKQQRNSLFRPDAAGPAGLTPLHI 720 721 AAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKK 780 781 STTEDHVVVNIPVSFSDREQKEPKSGPMASALEITQIPCKLCDHKLVYGTTRRSVAYRPA 840 841 MLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELLDYGTS |
| Interface Residues: | 13, 14, 750, 752, 793, 796, 797 |
| 3D-footprint Homologues: | 7v5n_B, 6m3d_C |
| Binding Motifs: | SPL1 dCCGTACGGa SPL1_2 CyGTACGGam MA1055.1 CCGTACGG M0735 dtcCGTACaa M0737 wwttGTACGGa MA1055.2 wwtGTACGGAwww MA1055.3 tGTACGGA |
| Binding Sites: | MA1055.1.13 MA1055.1.6 MA1055.1.17 MA1055.1.2 MA1055.1.3 MA1055.1.1 MA1055.1.4 MA1055.1.8 MA1055.1.16 MA1055.1.11 MA1055.1.10 MA1055.1.12 MA1055.1.14 MA1055.1.15 MA1055.1.18 MA1055.1.19 MA1055.1.20 MA1055.1.5 MA1055.1.7 MA1055.1.9 MA1055.2.1 MA1055.2.10 MA1055.2.11 MA1055.2.12 MA1055.2.13 MA1055.2.14 MA1055.2.15 MA1055.2.16 MA1055.2.17 MA1055.2.18 MA1055.2.19 MA1055.2.2 MA1055.2.20 MA1055.2.3 MA1055.2.4 MA1055.2.5 MA1055.2.6 MA1055.2.7 MA1055.2.8 MA1055.2.9 MA1055.3.6 MA1055.3.13 / MA1055.3.16 / MA1055.3.7 MA1055.3.9 MA1055.3.15 / MA1055.3.8 MA1055.3.17 / MA1055.3.5 MA1055.3.4 MA1055.3.10 / MA1055.3.14 MA1055.3.1 / MA1055.3.2 MA1055.3.11 / MA1055.3.12 / MA1055.3.19 / MA1055.3.20 MA1055.3.18 MA1055.3.3 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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