Transcription Factor
Accessions: | AGL3 (Athamap 20091028), P29383 (JASPAR 2024) |
Names: | AGL3, Agamous-like MADS-box protein AGL3, AGL3_ARATH, Protein SEPALLATA 4 |
Organisms: | Arabidopsis thaliana |
Libraries: | Athamap 20091028 1, JASPAR 2024 2 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 258 |
Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 82-173 K-box region |
Sequence: (in bold interface residues) | 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60 61 PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120 121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALT 180 181 QSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANAT 240 241 NSATTSQNVNGFFPGWMV |
Interface Residues: | 3, 4, 15, 18, 19, 23 |
3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A |
Binding Motifs: | AGL3 / MA0001.2 skwwCCAwwwWwrGwwab MA0001.1 CCAwWwaTrG MA0001.3 CCAwwwWwrG |
Binding Sites: | MA0001.1.1 MA0001.1.10 MA0001.1.11 MA0001.1.12 MA0001.1.13 MA0001.1.14 MA0001.1.15 MA0001.1.16 MA0001.1.17 MA0001.1.18 MA0001.1.19 MA0001.1.2 MA0001.1.20 MA0001.1.3 MA0001.1.4 MA0001.1.5 MA0001.1.6 MA0001.1.7 MA0001.1.8 MA0001.1.9 |
Publications: | Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol. Biol. 28:549-567 (1995). [Pubmed] Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). [Pubmed] |
Related annotations: | PaperBLAST |
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