Transcription Factor

Accessions: AGL3 (Athamap 20091028), P29383 (JASPAR 2024)
Names: AGL3, Agamous-like MADS-box protein AGL3, AGL3_ARATH, Protein SEPALLATA 4
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2024 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 258
Pfam Domains: 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain)
82-173 K-box region
Sequence:
(in bold interface residues)
1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60
61 PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120
121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALT 180
181 QSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANAT 240
241 NSATTSQNVNGFFPGWMV
Interface Residues: 3, 4, 15, 18, 19, 23
3D-footprint Homologues: 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A
Binding Motifs: AGL3 / MA0001.2 skwwCCAwwwWwrGwwab
MA0001.1 CCAwWwaTrG
MA0001.3 CCAwwwWwrG
Binding Sites: MA0001.1.1
MA0001.1.10
MA0001.1.11
MA0001.1.12
MA0001.1.13
MA0001.1.14
MA0001.1.15
MA0001.1.16
MA0001.1.17
MA0001.1.18
MA0001.1.19
MA0001.1.2
MA0001.1.20
MA0001.1.3
MA0001.1.4
MA0001.1.5
MA0001.1.6
MA0001.1.7
MA0001.1.8
MA0001.1.9
Publications: Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol. Biol. 28:549-567 (1995). [Pubmed]

Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.